RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1197996" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1197996 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1598575 1598575 PRJNA1197996_S_NODE_17262_length_281_cov_1.062500_g17208_i0 PRJNA1197996 17262 281 1.0625 2.985625 Myxococcales bacterium 2026763 Bacteria Bacteria 274 5.08e-69   NTclustered gi|2258824976|gb|CP060221.1| 2026763 g17208 i0 85.496 237.177935943061 262 38 93 0 1 262 1313248 1313509 MAG: Myxococcales bacterium isolate HK-STAS-MYXO-35 chromosome, complete genome blastn 66647 274 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
5427018 5427018 PRJNA1197996_S_NODE_12905_length_308_cov_1.940426_g12851_i0 PRJNA1197996 12905 308 1.940426 5.97651208 Labilithrix luteola 1391654 Bacteria Bacteria 366 9.039999999999999e-97   NTclustered gi|913610804|gb|CP012333.1| 1391654 g12851 i0 88.179 114.805194805195 313 29 100 6 1 308 3943010 3943319 Labilithrix luteola strain DSM 27648, complete genome blastn 35360 366 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
22001016 22001016 PRJNA1197996_S_NODE_5278_length_407_cov_1.529940_g5224_i0 PRJNA1197996 5278 407 1.52994 6.2268558 Labilithrix luteola 1391654 Bacteria Bacteria 582 1.1199999999999999e-161   NTclustered gi|913610804|gb|CP012333.1| 1391654 g5224 i0 92.982 132.724815724816 399 28 98 0 9 407 3942500 3942102 Labilithrix luteola strain DSM 27648, complete genome blastn 54019 582 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26660717 26660717 PRJNA1197996_S_NODE_1821_length_577_cov_16.678571_g1772_i0 PRJNA1197996 1821 577 16.678571 96.23535467 Myxococcales bacterium 2026763 Bacteria Bacteria 66.6 1.06e-9   NR MCB9637778.1 2026763 g1772 i0 37.8 0.426343154246101 82 46 41.1 2 47 283 4 83 MCB9637778.1 hypothetical protein [Myxococcales bacterium] diamond 246 66.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27799242 27799242 PRJNA1197996_S_NODE_24244_length_249_cov_1.903409_g24190_i0 PRJNA1197996 24244 249 1.903409 4.73948841 Myxococcota bacterium 2818507 Bacteria Bacteria 42.7 0.041   NR MFO0749967.1 2818507 g24190 i0 37 0.650602409638554 54 30 65.1 1 44 205 1920 1969 MFO0749967.1 hypothetical protein [Myxococcota bacterium] diamond 162 42.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
28430648 28430648 PRJNA1197996_S_NODE_2306_length_532_cov_17.845316_g2255_i0 PRJNA1197996 2306 532 17.845316 94.93708112 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 53.9 7.38e-5   NR MFN7698658.1 2026735 g2255 i0 42.9 0.473684210526316 42 24 23.7 0 1 126 58 99 MFN7698658.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 252 53.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28588593 28588593 PRJNA1197996_S_NODE_2767_length_501_cov_9.126168_g2715_i0 PRJNA1197996 2767 501 9.126168 45.72210168 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.7 0.00191   NR TNE50471.1 2026735 g2715 i0 40 0.754491017964072 60 34 35.9 1 483 304 31 88 TNE50471.1 MAG: hypothetical protein EP343_08380 [Deltaproteobacteria bacterium] diamond 378 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28999237 28999237 PRJNA1197996_S_NODE_3368_length_470_cov_7.546599_g3314_i0 PRJNA1197996 3368 470 7.546599 35.4690153 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.7 0.00146   NR TNE50471.1 2026735 g3314 i0 40 0.804255319148936 60 34 38.3 1 452 273 31 88 TNE50471.1 MAG: hypothetical protein EP343_08380 [Deltaproteobacteria bacterium] diamond 378 49.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29409264 29409264 PRJNA1197996_S_NODE_1689_length_592_cov_106.034682_g1641_i0 PRJNA1197996 1689 592 106.034682 627.72531744 Nannocystaceae bacterium 2545255 Bacteria Bacteria 107 2.44e-26   NR MEX1363673.1 2545255 g1641 i0 51 0.993243243243243 96 45 48.1 2 501 217 1 95 MEX1363673.1 calcium-binding EGF-like domain-containing protein [Nannocystaceae bacterium] diamond 588 107 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
29724791 29724791 PRJNA1197996_S_NODE_1070_length_697_cov_22.966346_g1027_i0 PRJNA1197996 1070 697 22.966346 160.07543162 Myxococcales bacterium 2026763 Bacteria Bacteria 57.8 5.27e-6   NR MCA9711701.1 2026763 g1027 i0 31.8 0.378766140602583 88 58 37.9 2 114 377 156 241 MCA9711701.1 hypothetical protein [Myxococcales bacterium] diamond 264 57.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30262346 30262346 PRJNA1197996_S_NODE_12112_length_314_cov_3.929461_g12058_i0 PRJNA1197996 12112 314 3.929461 12.33850754 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 48.9 5.71e-4   NR MBN2493263.1 2026735 g12058 i0 52.5 0.754777070063694 40 17 38.2 1 35 154 453 490 MBN2493263.1 metallophosphoesterase [Deltaproteobacteria bacterium] diamond 237 48.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;