RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1197996", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Kitrinoviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1197996 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5427378 5427378 PRJNA1197996_S_NODE_28025_length_242_cov_0.911243_g27971_i0 PRJNA1197996 28025 242 0.911243 2.20520806 Cucumovirus CMV 3428131 Viruses Viruses 409 1.12e-109   NTclustered gi|1403871792|gb|MF580923.1| 12305 g27971 i0 97.107 99.2768595041322 242 7 100 0 1 242 1414 1173 Cucumber mosaic virus clone hz_Ea-1 3a and CP genes, complete cds blastn 24025 409 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV
23276463 23276463 PRJNA1197996_S_NODE_4679_length_423_cov_1.100000_g4625_i0 PRJNA1197996 4679 423 1.1 4.653 Cucumovirus CMV 3428131 Viruses Viruses 749 0   NTclustered gi|1798044863|gb|MK330012.1| 12305 g4625 i0 98.582 99.3853427895981 423 6 100 0 1 423 19 441 Cucumber mosaic virus isolate ND segment RNA3, complete sequence blastn 42040 749 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Cucumovirus Cucumovirus CMV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;