RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1197996" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1197996 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
324173 324173 PRJNA1197996_S_NODE_26861_length_244_cov_1.350877_g26807_i0 PRJNA1197996 26861 244 1.350877 3.29613988 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 379 8.889999999999998e-101   NTclustered gi|2874253811|emb|OY969795.1| 464461 g26807 i0 94.672 145.196721311475 244 13 100 0 1 244 654211 654454 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 35428 379 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium
15626665 15626665 PRJNA1197996_S_NODE_14053_length_300_cov_1.696035_g13999_i0 PRJNA1197996 14053 300 1.696035 5.088105 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 555 1.7399999999999995e-153   NTclustered gi|565666443|emb|HG726047.1| 1444712 g13999 i0 100 107.84 300 0 100 0 1 300 583 284 Candidatus Rubidus massiliensis partial 16S rRNA gene, strain Rubis blastn 32352 555 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;