RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1197996" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1197996 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
323910 323910 PRJNA1197996_S_NODE_1581_length_606_cov_4.275797_g1533_i0 PRJNA1197996 1581 606 4.275797 25.91132982 Helicobacter rodentium 59617 Bacteria Bacteria 1110 0   NTclustered gi|50957140|gb|AY596225.1| 59617 g1533 i0 99.834 147.420792079208 604 1 99 0 3 606 2228 1625 Helicobacter rodentium strain MIT 95-1707 23S ribosomal RNA gene, partial sequence blastn 89337 1110 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter rodentium
9971770 9971770 PRJNA1197996_S_NODE_6688_length_379_cov_0.957516_g6634_i0 PRJNA1197996 6688 379 0.957516 3.62898564 root 1 Root_unresolved Root_unresolved 99 4.57e-16   NTclustered gi|2222034613|gb|CP094108.1| 210 g6634 i0 92.754 16.8284960422164 69 3 18 1 311 379 685180 685114 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 6378 99 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
14352892 14352892 PRJNA1197996_S_NODE_1512_length_615_cov_5.723247_g1465_i0 PRJNA1197996 1512 615 5.723247 35.19796905 Helicobacter rodentium 59617 Bacteria Bacteria 1131 0   NTclustered gi|50957140|gb|AY596225.1| 59617 g1465 i0 99.837 140.565853658537 615 1 100 0 1 615 1570 956 Helicobacter rodentium strain MIT 95-1707 23S ribosomal RNA gene, partial sequence blastn 86448 1131 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter rodentium
19449825 19449825 PRJNA1197996_S_NODE_11616_length_319_cov_1.378049_g11562_i0 PRJNA1197996 11616 319 1.378049 4.39597631 Helicobacter pylori 210 Bacteria Bacteria 110 1.75e-19   NTclustered gi|2222034613|gb|CP094108.1| 210 g11562 i0 94.444 18.9498432601881 72 2 23 1 1 72 685112 685181 Helicobacter pylori strain Hpfe073 chromosome, complete genome blastn 6045 110 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
23995732 23995732 PRJNA1197996_S_NODE_18099_length_276_cov_1.768473_g18045_i0 PRJNA1197996 18099 276 1.768473 4.88098548 Helicobacter 209 Bacteria Bacteria 510 3.48e-140   NTclustered gi|50957140|gb|AY596225.1| 59617 g18045 i0 100 143.278985507246 276 0 100 0 1 276 2666 2391 Helicobacter rodentium strain MIT 95-1707 23S ribosomal RNA gene, partial sequence blastn 39545 510 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter rodentium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;