RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1197996" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA1197996 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7421520 7421520 PRJNA1197996_S_NODE_20886_length_262_cov_2.857143_g20832_i0 PRJNA1197996 20886 262 2.857143 7.48571466 root 1 Root_unresolved Root_unresolved 442 1.2099999999999994e-119   NTclustered gi|2515741548|gb|CP117271.1| 2209 g20832 i0 100 133.610687022901 239 0 91 0 1 239 3940903 3940665 Mutant Methanosarcina mazei strain Mm Mut 208, complete genome blastn 35006 444 0.995495495495496 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
24549986 24549986 PRJNA1197996_S_NODE_1300_length_650_cov_2.242634_g1255_i0 PRJNA1197996 1300 650 2.242634 14.577121 Methanothermobacter wolfeii 145261 Archaea Archaea 54.7 0.018   NTclustered gi|2308640859|gb|CP104550.1| 145261 g1255 i0 96.875 0.0984615384615385 32 1 5 0 152 183 219384 219415 Methanothermobacter wolfeii strain DSM 2970 chromosome, complete genome blastn 64 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter wolfeii
32853562 32853562 PRJNA1197996_S_NODE_19000_length_271_cov_2.393939_g18946_i0 PRJNA1197996 19000 271 2.393939 6.48757469 Candidatus Methanophaga sp. GoMg3.2 2081356 Archaea Archaea 45.1 0.00792   NR NQE52868.1 2081356 g18946 i0 38.4 0.808118081180812 73 36 73.1 4 2 199 235 305 NQE52868.1 hypothetical protein [Candidatus Methanophaga sp. GoMg3.2] diamond 219 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Candidatus Methanophagales Candidatus Methanophagaceae Candidatus Methanophaga Candidatus Methanophaga sp. GoMg3.2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;