RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1197996", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 6 ✖

tax_kingdom 1

  • Metazoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1197996 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2874860 2874860 PRJNA1197996_S_NODE_23143_length_252_cov_1.620112_g23089_i0 PRJNA1197996 23143 252 1.620112 4.08268224 Sanguinicolid sp. W1134 309050 Platyhelminthes Platyhelminthes 455 1.49e-123   NTclustered gi|57791197|gb|AY858881.1| 309050 g23089 i0 99.206 96.6547619047619 252 2 100 0 1 252 3182 2931 Sanguinicolid sp. W1134 28S ribosomal RNA gene, partial sequence blastn 24357 455 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Aporocotylidae   Sanguinicolid sp. W1134
7977265 7977265 PRJNA1197996_S_NODE_15647_length_290_cov_1.165899_g15593_i0 PRJNA1197996 15647 290 1.165899 3.3811071 Sanguinicolid sp. W1134 309050 Platyhelminthes Platyhelminthes 492 1.3399999999999996e-134   NTclustered gi|57791184|gb|AY829253.1| 309050 g15593 i0 97.241 95.0827586206897 290 8 100 0 1 290 921 632 Sanguinicolid sp. W1134 18S small subunit ribosomal RNA gene, complete sequence blastn 27574 492 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Aporocotylidae   Sanguinicolid sp. W1134
24550247 24550247 PRJNA1197996_S_NODE_24300_length_249_cov_1.460227_g24246_i0 PRJNA1197996 24300 249 1.460227 3.63596523 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 448 2.46e-121   NTclustered gi|1124902734|gb|AY812498.2| 6182 g24246 i0 99.197 103.008032128514 249 1 100 1 1 249 746 993 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 25649 448 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24550356 24550356 PRJNA1197996_S_NODE_28920_length_238_cov_2.103030_g28866_i0 PRJNA1197996 28920 238 2.10303 5.0052114 Sanguinicolid sp. W1134 309050 Platyhelminthes Platyhelminthes 435 1.8200000000000003e-117   NTclustered gi|57791184|gb|AY829253.1| 309050 g28866 i0 99.58 103.428571428571 238 1 100 0 1 238 298 61 Sanguinicolid sp. W1134 18S small subunit ribosomal RNA gene, complete sequence blastn 24616 435 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Aporocotylidae   Sanguinicolid sp. W1134
27893666 27893666 PRJNA1197996_S_NODE_23265_length_252_cov_1.016760_g23211_i0 PRJNA1197996 23265 252 1.01676 2.5622352 Dibothriocephalus latus 60516 Platyhelminthes Platyhelminthes 58.5 1e-8   NR VDN13993.1 60516 g23211 i0 40 2.32142857142857 65 39 77.4 0 2 196 34 98 VDN13993.1 unnamed protein product [Dibothriocephalus latus] diamond 585 58.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Dibothriocephalus Dibothriocephalus latus
30091246 30091246 PRJNA1197996_S_NODE_10652_length_328_cov_1.509804_g10598_i0 PRJNA1197996 10652 328 1.509804 4.95215712 root 1 Root_unresolved Root_unresolved 52.8 3.05e-5   NR CAH8868615.1 157070 g10598 i0 37.3 4.14329268292683 75 44 68.6 2 27 251 389 460 CAH8868615.1 unnamed protein product [Trichobilharzia szidati] diamond 1359 53.1 0.994350282485876 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia szidati

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;