RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1196438", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 7 ✖

tax_phylum 1

  • Nitrososphaerota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1196438 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26755778 26755778 PRJNA1196438_P_NODE_64421_length_252_cov_2.530726_g63994_i0 PRJNA1196438 64421 252 2.530726 6.37742952 Nitrososphaera sp. 1971748 Archaea Archaea 166 1.6e-48   NR HYX71458.1 1971748 g63994 i0 95.2 1.97619047619048 83 4 98.8 0 2 250 168 250 HYX71458.1 LpxD N-terminal domain-containing protein [Nitrososphaera sp.] diamond 498 166 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
27230501 27230501 PRJNA1196438_P_NODE_66683_length_250_cov_2.367232_g66256_i0 PRJNA1196438 66683 250 2.367232 5.91808 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 42 0.0123   NR QLH10838.1 2259673 g66256 i0 41.3 0.552 46 26 54 1 107 241 10 55 QLH10838.1 hypothetical protein DSQ20_04650 [Nitrosarchaeum sp. AC2] diamond 138 42 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
28209312 28209312 PRJNA1196438_P_NODE_67086_length_250_cov_0.881356_g66659_i0 PRJNA1196438 67086 250 0.881356 2.20339 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 72.4 1.4e-12   NR MDW3645339.1 2169593 g66659 i0 57.9 1.296 57 24 68.4 0 182 12 385 441 MDW3645339.1 reverse transcriptase family protein [Nitrososphaeraceae archaeon] diamond 324 72.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
30483285 30483285 PRJNA1196438_P_NODE_64693_length_252_cov_1.737430_g64266_i0 PRJNA1196438 64693 252 1.73743 4.3783236 Nitrosopumilales archaeon 2026768 Archaea Archaea 169 5.95e-50   NR RPJ23877.1 2026768 g64266 i0 100 5.92857142857143 83 0 98.8 0 251 3 125 207 RPJ23877.1 MAG: ParA family protein [Nitrosopumilales archaeon] diamond 1494 169 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales     Nitrosopumilales archaeon
31146328 31146328 PRJNA1196438_P_NODE_77195_length_240_cov_2.467066_g76768_i0 PRJNA1196438 77195 240 2.467066 5.9209584 Nitrososphaerota archaeon 2026795 Archaea Archaea 42.4 0.0488   NR MDG6998124.1 2026795 g76768 i0 56.7 0.375 30 13 37.5 0 52 141 1 30 MDG6998124.1 PrsW family intramembrane metalloprotease [Nitrososphaerota archaeon] diamond 90 42.4 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31304736 31304736 PRJNA1196438_P_NODE_46355_length_279_cov_1.427184_g45928_i0 PRJNA1196438 46355 279 1.427184 3.98184336 Nitrososphaerota archaeon 2026795 Archaea Archaea 64.3 6.26e-10   NR MCD6125400.1 2026795 g45928 i0 61.4 1.37634408602151 44 17 47.3 0 135 4 2 45 MCD6125400.1 ribulose-phosphate 3-epimerase [Nitrososphaerota archaeon] diamond 384 64.3 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31494722 31494722 PRJNA1196438_P_NODE_41296_length_287_cov_1.453271_g40869_i0 PRJNA1196438 41296 287 1.453271 4.17088777 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 157 3.5199999999999995e-46   NR HSE99888.1 2169593 g40869 i0 78.9 0.993031358885017 95 20 99.3 0 286 2 124 218 HSE99888.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 285 157 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;