RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1196438" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1196438 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14352523 14352523 PRJNA1196438_P_NODE_70432_length_247_cov_0.896552_g70005_i0 PRJNA1196438 70432 247 0.896552 2.21448344 Pseudomonadati 3379134 Bacteria Bacteria 100 9.66e-23   NR MBE6382667.1 1932692 g70005 i0 58.8 1.94331983805668 80 33 97.2 0 241 2 209 288 MBE6382667.1 alkaline phosphatase [Lentisphaerota bacterium] diamond 480 100 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
27357119 27357119 PRJNA1196438_P_NODE_61623_length_256_cov_1.344262_g61196_i0 PRJNA1196438 61623 256 1.344262 3.44131072 Lentisphaeria bacterium 2053569 Bacteria Bacteria 55.1 5.7e-7   NR MDT8391404.1 2053569 g61196 i0 41.1 1.0546875 90 45 98.4 3 2 253 42 129 MDT8391404.1 biotin/lipoyl-containing protein [Lentisphaeria bacterium] diamond 270 55.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
28304186 28304186 PRJNA1196438_P_NODE_56406_length_263_cov_3.068421_g55979_i0 PRJNA1196438 56406 263 3.068421 8.06994723 Lentisphaeria bacterium 2053569 Bacteria Bacteria 69.7 1.54e-11   NR MBR7145007.1 2053569 g55979 i0 40.5 0.958174904942966 84 49 94.7 1 258 10 190 273 MBR7145007.1 beta-galactosidase [Lentisphaeria bacterium] diamond 252 69.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29125412 29125412 PRJNA1196438_P_NODE_46309_length_279_cov_1.509709_g45882_i0 PRJNA1196438 46309 279 1.509709 4.21208811 Victivallis vadensis 172901 Bacteria Bacteria 44.7 0.00794   NR WP_168961273.1 172901 g45882 i0 41.5 0.881720430107527 82 38 88.2 5 29 274 16 87 WP_168961273.1 hypothetical protein [Victivallis vadensis] diamond 246 44.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis vadensis
29883104 29883104 PRJNA1196438_P_NODE_20711_length_312_cov_2.933054_g20285_i0 PRJNA1196438 20711 312 2.933054 9.15112848 Lentisphaerota bacterium 1932692 Bacteria Bacteria 56.2 1.41e-6   NR NLN02221.1 1932692 g20285 i0 57.4 1.39423076923077 47 20 45.2 0 170 310 117 163 NLN02221.1 ATP-binding protein [Lentisphaerota bacterium] diamond 435 56.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
30325822 30325822 PRJNA1196438_P_NODE_80012_length_234_cov_2.378882_g79585_i0 PRJNA1196438 80012 234 2.378882 5.56658388 Victivallales bacterium 2212475 Bacteria Bacteria 119 6.68e-30   NR MBQ9368782.1 2212475 g79585 i0 74 0.987179487179487 77 20 98.7 0 4 234 305 381 MBQ9368782.1 protease modulator HflK [Victivallales bacterium] diamond 231 119 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
31558084 31558084 PRJNA1196438_P_NODE_71776_length_246_cov_0.884393_g71349_i0 PRJNA1196438 71776 246 0.884393 2.17560678 Lentisphaeria bacterium 2053569 Bacteria Bacteria 107 1.58e-25   NR MCI6288833.1 2053569 g71349 i0 56.8 1.97560975609756 81 35 98.8 0 2 244 104 184 MCI6288833.1 YibE/F family protein [Lentisphaeria bacterium] diamond 486 107 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;