RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1196438" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1196438 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20724265 20724265 PRJNA1196438_P_NODE_19517_length_312_cov_3.096234_g19091_i0 PRJNA1196438 19517 312 3.096234 9.66025008 Dictyostelium discoideum 44689 Evosea other_Eukaryota 460 4.09e-125   NTclustered gi|66820011|ref|XM_638568.1| 352472 g19091 i0 91.793 1.05448717948718 329 10 100 2 1 312 500 172 Dictyostelium discoideum AX4 ARID/BRIGHT DNA binding domain-containing protein (DDB_G0275333) mRNA, complete cds blastn 329 460 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
32651801 32651801 PRJNA1196438_P_NODE_47440_length_277_cov_2.024510_g47013_i0 PRJNA1196438 47440 277 2.02451 5.6078927 root 1 Root_unresolved Root_unresolved 56.2 1.01e-6   NR XP_003287547.1 5786 g47013 i0 34.7 3.8014440433213 75 49 81.2 0 249 25 343 417 XP_003287547.1 uncharacterized protein DICPUDRAFT_47412 [Dictyostelium purpureum] diamond 1053 56.6 0.992932862190813 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;