RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196438", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 2 ✖

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1196438 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15626276 15626276 PRJNA1196438_P_NODE_69693_length_247_cov_3.890805_g69266_i0 PRJNA1196438 69693 247 3.890805 9.61028835 Fervidobacterium nodosum 2424 Bacteria Bacteria 412 8.89e-111   NTclustered gi|154152641|gb|CP000771.1| 381764 g69266 i0 96.761 1 247 8 100 0 1 247 275857 275611 Fervidobacterium nodosum Rt17-B1, complete genome blastn 247 412 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium nodosum
31114894 31114894 PRJNA1196438_P_NODE_36735_length_294_cov_2.040724_g36309_i0 PRJNA1196438 36735 294 2.040724 5.99972856 Thermotogota bacterium 2053689 Bacteria Bacteria 48.9 4.86e-4   NR HRW35710.1 2053689 g36309 i0 47.3 1.63265306122449 55 29 56.1 0 1 165 727 781 HRW35710.1 BREX system P-loop protein BrxC [Thermotogota bacterium] diamond 480 48.9 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;