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contig_metadata

30 rows where bioproject = "PRJNA1196438", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 30 ✖

tax_kingdom 1

  • Pseudomonadati · 30 ✖

bioproject 1

  • PRJNA1196438 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
322994 322994 PRJNA1196438_P_NODE_28801_length_301_cov_3.394737_g28375_i0 PRJNA1196438 28801 301 3.394737 10.21815837 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 93.2 3.79e-20   NR MDO5483294.1 2049043 g28375 i0 86.3 1.01661129568106 51 7 50.8 0 299 147 112 162 MDO5483294.1 type I glyceraldehyde-3-phosphate dehydrogenase [Desulfovibrionaceae bacterium] diamond 306 93.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
1598013 1598013 PRJNA1196438_P_NODE_62182_length_255_cov_1.708791_g61755_i0 PRJNA1196438 62182 255 1.708791 4.35741705 Pelobacter propionicus 29543 Bacteria Bacteria 387 5.589999999999998e-103   NTclustered gi|118501159|gb|CP000482.1| 338966 g61755 i0 94.444 0.988235294117647 252 13 98 1 5 255 3327706 3327455 Pelobacter propionicus DSM 2379, complete genome blastn 252 387 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus
1598020 1598020 PRJNA1196438_P_NODE_62622_length_254_cov_2.502762_g62195_i0 PRJNA1196438 62622 254 2.502762 6.35701548 uncultured Mailhella sp. 1981031 Bacteria Bacteria 119 2.2400000000000002e-22   NTclustered gi|2729058701|emb|OZ007001.1| 1981031 g62195 i0 79.07 13.1732283464567 172 36 68 0 83 254 1296871 1297042 MAG: uncultured Mailhella sp. isolate metabat2_pooled_hifiasm.920 MAG genome assembly, chromosome: 1 blastn 3346 119 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Mailhella uncultured Mailhella sp.
4150439 4150439 PRJNA1196438_P_NODE_73564_length_244_cov_1.818713_g73137_i0 PRJNA1196438 73564 244 1.818713 4.43765972 Mailhella sp. 1981029 Bacteria Bacteria 85.9 2.42e-17   NR MBO4318786.1 1981029 g73137 i0 55.1 1.85655737704918 78 34 95.9 1 2 235 27 103 MBO4318786.1 amidohydrolase [Mailhella sp.] diamond 453 85.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Mailhella Mailhella sp.
13076756 13076756 PRJNA1196438_P_NODE_45911_length_279_cov_3.383495_g45484_i0 PRJNA1196438 45911 279 3.383495 9.43995105 Pseudomonadati 3379134 Bacteria Bacteria 147 1.54e-41   NR MDR1776580.1 885 g45484 i0 81.7 38.1612903225806 93 17 100 0 1 279 133 225 MDR1776580.1 ATP-binding cassette domain-containing protein [Desulfovibrio sp.] diamond 10647 147 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
13076808 13076808 PRJNA1196438_P_NODE_49491_length_274_cov_1.547264_g49064_i0 PRJNA1196438 49491 274 1.547264 4.23950336 Desulfosediminicola flagellatus 2569541 Bacteria Bacteria 54.7 0.007   NTclustered gi|1861338670|gb|CP050698.1| 2569541 g49064 i0 92.105 0.138686131386861 38 3 14 0 65 102 145054 145091 Desulfosediminicola flagellatus strain IMCC35005 chromosome, complete genome blastn 38 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfosediminicola Desulfosediminicola flagellatus
17621260 17621260 PRJNA1196438_P_NODE_79094_length_236_cov_2.361963_g78667_i0 PRJNA1196438 79094 236 2.361963 5.57423268 Syntrophotalea 2812025 Bacteria Bacteria 162 2.72e-44   NR WP_011342728.1 19 g78667 i0 93.6 2.97457627118644 78 5 99.2 0 234 1 679 756 WP_011342728.1 2-oxoglutarate dehydrogenase E1 component [Syntrophotalea carbinolica] diamond 702 162 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea carbinolica
18894897 18894897 PRJNA1196438_P_NODE_59495_length_259_cov_1.672043_g59068_i0 PRJNA1196438 59495 259 1.672043 4.33059137 uncultured Desulfovibrio sp. 167968 Bacteria Bacteria 164 1.35e-46   NR WP_300810938.1 167968 g59068 i0 96.5 3.98455598455598 86 3 99.6 0 1 258 19 104 WP_300810938.1 ATP-dependent protease ATPase subunit HslU [uncultured Desulfovibrio sp.] diamond 1032 164 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.
23275115 23275115 PRJNA1196438_P_NODE_14639_length_312_cov_4.355649_g14213_i0 PRJNA1196438 14639 312 4.355649 13.58962488 Desulfovibrio piger 901 Bacteria Bacteria 117 1.02e-21   NTclustered gi|1102127722|emb|LT630450.1| 901 g14213 i0 81.333 3.13141025641026 150 22 47 6 5 151 1661094 1661240 Desulfovibrio piger isolate FI11049 genome assembly, chromosome: I blastn 977 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio piger
23275679 23275679 PRJNA1196438_P_NODE_68139_length_249_cov_0.886364_g67712_i0 PRJNA1196438 68139 249 0.886364 2.20704636 Pelobacter propionicus 29543 Bacteria Bacteria 377 3.27e-100   NTclustered gi|118501159|gb|CP000482.1| 338966 g67712 i0 93.976 1 249 15 100 0 1 249 830463 830711 Pelobacter propionicus DSM 2379, complete genome blastn 249 377 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Pelobacter Pelobacter propionicus
24549699 24549699 PRJNA1196438_P_NODE_72860_length_245_cov_0.906977_g72433_i0 PRJNA1196438 72860 245 0.906977 2.22209365 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 82.4 4.04e-17   NR HSG32822.1 2202153 g72433 i0 51.9 0.991836734693878 81 38 99.2 1 3 245 47 126 HSG32822.1 hypothetical protein [Thermodesulfobacteriota bacterium] diamond 243 82.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
26838528 26838528 PRJNA1196438_P_NODE_59141_length_259_cov_2.887097_g58714_i0 PRJNA1196438 59141 259 2.887097 7.47758123 Pseudomonadati 3379134 Bacteria Bacteria 105 3.86e-24   NR MBP7516736.1 895 g58714 i0 68.2 4.91119691119691 85 25 98.5 1 4 258 372 454 MBP7516736.1 bi-domain-containing oxidoreductase [Desulfobulbus sp.] diamond 1272 106 0.990566037735849 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus sp.
27736204 27736204 PRJNA1196438_P_NODE_48724_length_275_cov_2.108911_g48297_i0 PRJNA1196438 48724 275 2.108911 5.79950525 Desulfuromonadales bacterium C 2099678 Bacteria Bacteria 70.1 1.26e-11   NR OEU73135.1 1869309 g48297 i0 55.6 2.41090909090909 54 24 58.9 0 163 2 3 56 OEU73135.1 MAG: aspartyl/glutamyl-tRNA amidotransferase subunit A [Desulfuromonadales bacterium C00003107] diamond 663 70.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales     Desulfuromonadales bacterium C00003107
27956947 27956947 PRJNA1196438_P_NODE_72485_length_245_cov_1.680233_g72058_i0 PRJNA1196438 72485 245 1.680233 4.11657085 uncultured Desulfovibrio sp. 167968 Bacteria Bacteria 63.2 2.42e-9   NR WP_298995851.1 167968 g72058 i0 75.7 0.453061224489796 37 9 45.3 0 120 10 1 37 WP_298995851.1 glycosyltransferase [uncultured Desulfovibrio sp.] diamond 111 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio uncultured Desulfovibrio sp.
28209326 28209326 PRJNA1196438_P_NODE_80746_length_232_cov_2.930818_g80319_i0 PRJNA1196438 80746 232 2.930818 6.79949776 Desulfovibrio sp. 885 Bacteria Bacteria 106 3.23e-26   NR WP_300551652.1 885 g80319 i0 69.7 3.87931034482759 76 23 98.3 0 230 3 134 209 WP_300551652.1 UvrD-helicase domain-containing protein, partial [Desulfovibrio sp.] diamond 900 106 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
28462325 28462325 PRJNA1196438_P_NODE_71106_length_246_cov_2.306358_g70679_i0 PRJNA1196438 71106 246 2.306358 5.67364068 Desulfovibrio sp. 885 Bacteria Bacteria 47.8 6.34e-4   NR MFG6376228.1 885 g70679 i0 72 0.304878048780488 25 7 30.5 0 149 223 367 391 MFG6376228.1 minor capsid protein [Desulfovibrio sp.] diamond 75 47.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
28746274 28746274 PRJNA1196438_P_NODE_86127_length_210_cov_5.240876_g85699_i0 PRJNA1196438 86127 210 5.240876 11.0058396 Desulfofustis sp. 2053546 Bacteria Bacteria 41.2 0.0406   NR MCG6929013.1 2053546 g85699 i0 51.2 0.585714285714286 41 12 47.1 2 143 45 10 50 MCG6929013.1 MarC family protein [Desulfofustis sp.] diamond 123 41.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfofustis Desulfofustis sp.
28828179 28828179 PRJNA1196438_P_NODE_54828_length_266_cov_1.606218_g54401_i0 PRJNA1196438 54828 266 1.606218 4.27253988 Pseudomonadati 3379134 Bacteria Bacteria 73.6 6.6e-13   NR PMP61111.1 1653476 g54401 i0 47.8 6.74436090225564 90 43 98.1 2 265 5 152 240 PMP61111.1 MAG: sodium:proton antiporter [Caldimicrobium thiodismutans] diamond 1794 74.3 0.990578734858681 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Caldimicrobium Caldimicrobium thiodismutans
29207379 29207379 PRJNA1196438_P_NODE_81789_length_230_cov_2.764331_g81362_i0 PRJNA1196438 81789 230 2.764331 6.3579613 Desulfovibrionaceae 194924 Bacteria Bacteria 59.3 3.87e-8   NR MBA4356348.1 885 g81362 i0 96.7 1.17391304347826 30 1 39.1 0 92 3 1 30 MBA4356348.1 malate dehydrogenase [Desulfovibrio sp.] diamond 270 59.7 0.993299832495812 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
29522942 29522942 PRJNA1196438_P_NODE_74730_length_243_cov_1.752941_g74303_i0 PRJNA1196438 74730 243 1.752941 4.25964663 Bilophila 35832 Bacteria Bacteria 82 5.59e-16   NR WP_341462654.1 35833 g74303 i0 54.8 5.40740740740741 73 33 90.1 0 222 4 262 334 WP_341462654.1 DNA-primase RepB domain-containing protein [Bilophila wadsworthia] diamond 1314 82 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Bilophila Bilophila wadsworthia
30040870 30040870 PRJNA1196438_P_NODE_10571_length_327_cov_1.649606_g10145_i0 PRJNA1196438 10571 327 1.649606 5.39421162 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 47.8 0.0016   NR MDO4840022.1 2049043 g10145 i0 31.1 2.45871559633028 106 66 97.2 3 320 3 48 146 MDO4840022.1 AAA family ATPase [Desulfovibrionaceae bacterium] diamond 804 47.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
30735920 30735920 PRJNA1196438_P_NODE_69234_length_248_cov_1.371429_g68807_i0 PRJNA1196438 69234 248 1.371429 3.40114392 Desulfovibrio sp. 885 Bacteria Bacteria 122 1.0699999999999999e-31   NR MCX4309675.1 885 g68807 i0 86.5 5.37096774193548 74 10 89.5 0 222 1 232 305 MCX4309675.1 flagellin [Desulfovibrio sp.] diamond 1332 122 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
30754989 30754989 PRJNA1196438_P_NODE_37574_length_292_cov_3.442922_g37147_i0 PRJNA1196438 37574 292 3.442922 10.05333224 Desulfovibrio 872 Bacteria Bacteria 110 1.13e-26   NR MDR3361274.1 885 g37147 i0 77 1.26369863013699 61 14 62.7 0 290 108 261 321 MDR3361274.1 DNA cytosine methyltransferase [Desulfovibrio sp.] diamond 369 110 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
31007724 31007724 PRJNA1196438_P_NODE_62274_length_255_cov_1.423077_g61847_i0 PRJNA1196438 62274 255 1.423077 3.62884635 Desulfovibrio 872 Bacteria Bacteria 114 8.77e-28   NR WP_291437547.1 885 g61847 i0 90.3 2.18823529411765 62 6 72.9 0 5 190 350 411 WP_291437547.1 flagellar basal body P-ring formation chaperone FlgA [Desulfovibrio sp.] diamond 558 115 0.991304347826087 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
31102337 31102337 PRJNA1196438_P_NODE_56815_length_263_cov_1.542105_g56388_i0 PRJNA1196438 56815 263 1.542105 4.05573615 Bacteria 2 Bacteria Bacteria 55.1 1.59e-6   NR HEA70152.1 2044940 g56388 i0 100 0.855513307984791 25 0 28.5 0 2 76 236 260 HEA70152.1 enoyl-CoA hydratase [Desulfobacterales bacterium] diamond 225 55.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
31133796 31133796 PRJNA1196438_P_NODE_16755_length_312_cov_3.619247_g16329_i0 PRJNA1196438 16755 312 3.619247 11.29205064 Desulfovibrio 872 Bacteria Bacteria 78.6 1.42e-15   NR WP_320855108.1 885 g16329 i0 69.6 5.92307692307692 56 17 53.8 0 311 144 96 151 WP_320855108.1 Mur ligase family protein, partial [Desulfovibrio sp.] diamond 1848 78.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
31639984 31639984 PRJNA1196438_P_NODE_27756_length_301_cov_4.043860_g27330_i0 PRJNA1196438 27756 301 4.04386 12.1720186 Desulfovibrio 872 Bacteria Bacteria 76.6 7.91e-14   NR QCC86389.1 876 g27330 i0 64 2.49169435215947 50 18 49.8 0 151 300 283 332 QCC86389.1 hypothetical protein DDIC_10985 [Desulfovibrio desulfuricans] diamond 750 76.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
32222223 32222223 PRJNA1196438_P_NODE_56718_length_263_cov_1.642105_g56291_i0 PRJNA1196438 56718 263 1.642105 4.31873615 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 176 2.27e-50   NR MDD6087995.1 2049043 g56291 i0 92 0.992395437262357 87 7 99.2 0 263 3 169 255 MDD6087995.1 phosphoenolpyruvate carboxykinase (ATP) [Desulfovibrionaceae bacterium] diamond 261 176 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
32651806 32651806 PRJNA1196438_P_NODE_66720_length_250_cov_2.242938_g66293_i0 PRJNA1196438 66720 250 2.242938 5.607345 Desulfovibrio 872 Bacteria Bacteria 85.1 2.73e-17   NR WP_300124282.1 885 g66293 i0 76.3 1.428 59 14 70.8 0 2 178 299 357 WP_300124282.1 3-isopropylmalate dehydrogenase [Desulfovibrio sp.] diamond 357 85.9 0.990686845168801 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp.
32759168 32759168 PRJNA1196438_P_NODE_68880_length_248_cov_2.068571_g68453_i0 PRJNA1196438 68880 248 2.068571 5.13005608 Desulfobacterales bacterium 2044940 Bacteria Bacteria 124 8.1e-31   NR MFP4257119.1 2044940 g68453 i0 65.9 0.991935483870968 82 28 99.2 0 1 246 1357 1438 MFP4257119.1 hypothetical protein [Desulfobacterales bacterium] diamond 246 124 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;