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contig_metadata

36 rows where bioproject = "PRJNA1196438", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 36 ✖

tax_kingdom 1

  • Pseudomonadati · 36 ✖

bioproject 1

  • PRJNA1196438 · 36 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10526840 10526840 PRJNA1196438_P_NODE_40069_length_289_cov_1.208333_g39642_i0 PRJNA1196438 40069 289 1.208333 3.49208237 Myxococcaceae bacterium 2484252 Bacteria Bacteria 185 6.36e-53   NR MDB5220194.1 2484252 g39642 i0 94.7 1.97231833910035 95 5 98.6 0 289 5 130 224 MDB5220194.1 Serine/threonine protein kinase PrkC, regulator of stationary phase [Myxococcaceae bacterium] diamond 570 185 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
11802216 11802216 PRJNA1196438_P_NODE_84550_length_220_cov_4.285714_g84122_i0 PRJNA1196438 84550 220 4.285714 9.4285708 Corallococcus sp. CAG:1435 1262867 Bacteria Bacteria 156 1.44e-33   NTclustered gi|2729058728|emb|OZ007028.1| 1262867 g84122 i0 87.97 0.604545454545454 133 15 60 1 1 133 1299106 1299237 MAG: Corallococcus sp. CAG:1435 isolate metabat2_pooled_hifiasm.1119 MAG genome assembly, chromosome: 1 blastn 133 156 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CAG:1435
11802276 11802276 PRJNA1196438_P_NODE_9990_length_334_cov_3.796935_g9565_i0 PRJNA1196438 9990 334 3.796935 12.6817629 Myxococcota bacterium 2818507 Bacteria Bacteria 60.2 1.88e-4   NTclustered gi|2621786039|emb|OY782497.1| 2818507 g9565 i0 100 13.1377245508982 32 0 10 0 289 320 4146295 4146264 MAG: Myxococcota bacterium isolate 0c961c99-2a7e-4543-b017-306f11f6fc1d genome assembly, chromosome: 1 blastn 4388 60.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
13076490 13076490 PRJNA1196438_P_NODE_15971_length_312_cov_3.832636_g15545_i0 PRJNA1196438 15971 312 3.832636 11.95782432 Sorangium cellulosum 56 Bacteria Bacteria 128 4.7099999999999995e-25   NTclustered gi|520999024|gb|CP003969.1| 1254432 g15545 i0 86.957 4.41346153846154 115 13 37 2 3 116 12355409 12355522 Sorangium cellulosum So0157-2, complete genome blastn 1377 128 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
14352612 14352612 PRJNA1196438_P_NODE_76772_length_241_cov_2.494048_g76345_i0 PRJNA1196438 76772 241 2.494048 6.01065568 Archangium gephyra 48 Bacteria Bacteria 160 3.1e-47   NR PZR02436.1 48 g76345 i0 97.5 0.983402489626556 79 2 98.3 0 3 239 82 160 PZR02436.1 MAG: hypothetical protein DI536_37000, partial [Archangium gephyra] diamond 237 160 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
15625695 15625695 PRJNA1196438_P_NODE_20253_length_312_cov_2.995816_g19827_i0 PRJNA1196438 20253 312 2.995816 9.34694592 Corallococcus sp. CAG:1435 1262867 Bacteria Bacteria 175 1.57e-50   NR CCZ94949.1 1262867 g19827 i0 77.2 2.19230769230769 114 15 99 1 2 310 298 411 CCZ94949.1 asparagine--tRNA ligase [Corallococcus sp. CAG:1435] diamond 684 175 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CAG:1435
15626481 15626481 PRJNA1196438_P_NODE_85013_length_217_cov_4.194444_g84585_i0 PRJNA1196438 85013 217 4.194444 9.10194348 Polyangium aurulentum 2567896 Bacteria Bacteria 56.5 0.001   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g84585 i0 100 0.91705069124424 30 0 14 0 147 176 10339180 10339209 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 199 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
16900660 16900660 PRJNA1196438_P_NODE_72554_length_245_cov_1.476744_g72127_i0 PRJNA1196438 72554 245 1.476744 3.6180228 Corallococcus sp. CAG:1435 1262867 Bacteria Bacteria 63.9 1.02e-5   NTclustered gi|2729058728|emb|OZ007028.1| 1262867 g72127 i0 86.441 0.240816326530612 59 6 24 2 1 58 329214 329157 MAG: Corallococcus sp. CAG:1435 isolate metabat2_pooled_hifiasm.1119 MAG genome assembly, chromosome: 1 blastn 59 63.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CAG:1435
26597347 26597347 PRJNA1196438_P_NODE_32181_length_300_cov_3.242291_g31755_i0 PRJNA1196438 32181 300 3.242291 9.726873 Corallococcus sp. 1898750 Bacteria Bacteria 85.1 9.27e-17   NR MCM1289784.1 1898750 g31755 i0 74.5 0.51 51 13 51 0 298 146 442 492 MCM1289784.1 TIGR03960 family B12-binding radical SAM protein [Corallococcus sp.] diamond 153 85.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp.
26711307 26711307 PRJNA1196438_P_NODE_69181_length_248_cov_1.525714_g68754_i0 PRJNA1196438 69181 248 1.525714 3.78377072 Pseudomonadati 3379134 Bacteria Bacteria 69.7 9.17e-12   NR MCE3241273.1 2026735 g68754 i0 97 1.59677419354839 33 1 39.9 0 247 149 299 331 MCE3241273.1 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [Deltaproteobacteria bacterium] diamond 396 69.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26723851 26723851 PRJNA1196438_P_NODE_75841_length_242_cov_1.840237_g75414_i0 PRJNA1196438 75841 242 1.840237 4.45337354 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 47.4 8.06e-4   NR MBI2391770.1 2026735 g75414 i0 44.2 0.644628099173554 52 29 64.5 0 156 1 3 54 MBI2391770.1 RluA family pseudouridine synthase [Deltaproteobacteria bacterium] diamond 156 47.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
26755791 26755791 PRJNA1196438_P_NODE_78821_length_236_cov_3.478528_g78394_i0 PRJNA1196438 78821 236 3.478528 8.20932608 Polyangiaceae bacterium 2268199 Bacteria Bacteria 133 5.629999999999999e-37   NR MCU0659858.1 2268199 g78394 i0 94.4 0.902542372881356 71 4 90.3 0 214 2 122 192 MCU0659858.1 DUF6161 domain-containing protein [Polyangiaceae bacterium] diamond 213 133 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
26914227 26914227 PRJNA1196438_P_NODE_79382_length_235_cov_2.876543_g78955_i0 PRJNA1196438 79382 235 2.876543 6.75987605 Candidatus Fimimonas gallinarum 2840821 Bacteria Bacteria 73.9 2.35e-14   NR HIR65436.1 2840821 g78955 i0 64.3 1.42978723404255 56 20 71.5 0 168 1 1 56 HIR65436.1 hypothetical protein [Candidatus Fimimonas gallinarum] diamond 336 73.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Candidatus Fimimonas Candidatus Fimimonas gallinarum
27103961 27103961 PRJNA1196438_P_NODE_83242_length_227_cov_3.038961_g82815_i0 PRJNA1196438 83242 227 3.038961 6.89844147 Polyangiales bacterium 3034171 Bacteria Bacteria 153 4.19e-42   NR MFO0561854.1 3034171 g82815 i0 94.7 0.991189427312775 75 4 99.1 0 3 227 442 516 MFO0561854.1 M81 family metallopeptidase [Polyangiales bacterium] diamond 225 153 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27262244 27262244 PRJNA1196438_P_NODE_63303_length_253_cov_2.583333_g62876_i0 PRJNA1196438 63303 253 2.583333 6.53583249 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00615   NR MCP4160800.1 2026735 g62876 i0 37.5 0.948616600790514 80 48 94.9 2 2 241 109 186 MCP4160800.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 240 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27609658 27609658 PRJNA1196438_P_NODE_66904_length_250_cov_1.757062_g66477_i0 PRJNA1196438 66904 250 1.757062 4.392655 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00605   NR MBM4372378.1 2026735 g66477 i0 40.7 1.224 54 28 60 2 76 225 308 361 MBM4372378.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 306 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27799181 27799181 PRJNA1196438_P_NODE_31044_length_300_cov_9.700441_g30618_i0 PRJNA1196438 31044 300 9.700441 29.101323 Myxococcales bacterium 2026763 Bacteria Bacteria 43.1 0.0424   NR HUJ29532.1 2026763 g30618 i0 50 0.4 40 20 40 0 296 177 133 172 HUJ29532.1 tyrosine-type recombinase/integrase [Myxococcales bacterium] diamond 120 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28146511 28146511 PRJNA1196438_P_NODE_22705_length_312_cov_2.656904_g22279_i0 PRJNA1196438 22705 312 2.656904 8.28954048 Corallococcus sp. 1898750 Bacteria Bacteria 96.3 8.859999999999999e-23   NR MCM1533135.1 1898750 g22279 i0 90 1.44230769230769 50 5 48.1 0 2 151 58 107 MCM1533135.1 KilA-N domain-containing protein [Corallococcus sp.] diamond 450 96.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp.
28240837 28240837 PRJNA1196438_P_NODE_25546_length_306_cov_1.047210_g25120_i0 PRJNA1196438 25546 306 1.04721 3.2044626 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 72.4 2.86e-12   NR MCD6198971.1 2026735 g25120 i0 43.9 1.66666666666667 82 46 80.4 0 2 247 397 478 MCD6198971.1 IS21 family transposase [Deltaproteobacteria bacterium] diamond 510 72.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28430603 28430603 PRJNA1196438_P_NODE_48526_length_275_cov_3.059406_g48099_i0 PRJNA1196438 48526 275 3.059406 8.4133665 Polyangia bacterium 3058050 Bacteria Bacteria 42 0.0161   NR HEY5448050.1 3058050 g48099 i0 37.8 0.490909090909091 45 28 49.1 0 117 251 9 53 HEY5448050.1 aldehyde dehydrogenase family protein [Polyangia bacterium] diamond 135 42 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
28588567 28588567 PRJNA1196438_P_NODE_70887_length_246_cov_3.231214_g70460_i0 PRJNA1196438 70887 246 3.231214 7.94878644 Archangium sp. 1872627 Bacteria Bacteria 128 1.2e-34   NR WP_331112044.1 1872627 g70460 i0 81.5 1.97560975609756 81 15 98.8 0 2 244 158 238 WP_331112044.1 SDR family NAD(P)-dependent oxidoreductase [Archangium sp.] diamond 486 128 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
29081002 29081002 PRJNA1196438_P_NODE_43528_length_283_cov_2.557143_g43101_i0 PRJNA1196438 43528 283 2.557143 7.23671469 Bacteria 2 Bacteria Bacteria 71.2 4.34e-12   NR MCM1043512.1 1898750 g43101 i0 61.7 1.68551236749117 47 18 49.8 0 177 37 7 53 MCM1043512.1 IS30 family transposase [Corallococcus sp.] diamond 477 71.6 0.994413407821229 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp.
29503928 29503928 PRJNA1196438_P_NODE_64870_length_252_cov_1.418994_g64443_i0 PRJNA1196438 64870 252 1.418994 3.57586488 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 150 3.68e-42   NR MCE3243555.1 2026735 g64443 i0 91.6 0.988095238095238 83 7 98.8 0 3 251 19 101 MCE3243555.1 transporter substrate-binding protein [Deltaproteobacteria bacterium] diamond 249 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29554350 29554350 PRJNA1196438_P_NODE_45270_length_280_cov_3.405797_g44843_i0 PRJNA1196438 45270 280 3.405797 9.5362316 Bacteria candidate phyla 1783234 Bacteria Bacteria 188 5.45e-57   NR MPZ77646.1 2026735 g44843 i0 95.7 9.96428571428571 93 4 99.6 0 279 1 145 237 MPZ77646.1 extracellular solute-binding protein [Deltaproteobacteria bacterium] diamond 2790 188 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30483292 30483292 PRJNA1196438_P_NODE_67433_length_249_cov_6.710227_g67006_i0 PRJNA1196438 67433 249 6.710227 16.70846523 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 95.5 1.13e-20   NR MBS2017521.1 2026735 g67006 i0 58.8 3.93975903614458 85 32 98.8 2 4 249 358 442 MBS2017521.1 U32 family peptidase [Deltaproteobacteria bacterium] diamond 981 95.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30641048 30641048 PRJNA1196438_P_NODE_58893_length_260_cov_1.336898_g58466_i0 PRJNA1196438 58893 260 1.336898 3.4759348 Labilithrix sp. 1971228 Bacteria Bacteria 72.8 9.09e-13   NR MDB4938939.1 1971228 g58466 i0 53.6 0.796153846153846 69 29 77.3 2 37 237 69 136 MDB4938939.1 hypothetical protein [Labilithrix sp.] diamond 207 72.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
30735887 30735887 PRJNA1196438_P_NODE_12314_length_312_cov_9.426778_g11888_i0 PRJNA1196438 12314 312 9.426778 29.41154736 Polyangiaceae bacterium 2268199 Bacteria Bacteria 52.8 5.37e-6   NR HYQ01258.1 2268199 g11888 i0 60.8 0.980769230769231 51 19 48.1 1 2 151 58 108 HYQ01258.1 biopolymer transporter ExbD [Polyangiaceae bacterium] diamond 306 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30767601 30767601 PRJNA1196438_P_NODE_38374_length_291_cov_2.555046_g37947_i0 PRJNA1196438 38374 291 2.555046 7.43518386 Polyangiaceae bacterium 2268199 Bacteria Bacteria 79 1.4e-16   NR MCC6553134.1 2268199 g37947 i0 46.8 0.814432989690722 79 38 81.4 2 48 284 14 88 MCC6553134.1 hypothetical protein [Polyangiaceae bacterium] diamond 237 79 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30830760 30830760 PRJNA1196438_P_NODE_81734_length_230_cov_2.936306_g81307_i0 PRJNA1196438 81734 230 2.936306 6.7535038 Corallococcus sp. 1898750 Bacteria Bacteria 43.9 0.0126   NR MCM1533456.1 1898750 g81307 i0 35.7 0.91304347826087 70 43 90 2 217 11 495 563 MCM1533456.1 hypothetical protein [Corallococcus sp.] diamond 210 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp.
31178081 31178081 PRJNA1196438_P_NODE_85175_length_216_cov_4.209790_g84747_i0 PRJNA1196438 85175 216 4.20979 9.0931464 Cystobacter fuscus 43 Bacteria Bacteria 89 1.38e-18   NR WP_002623324.1 43 g84747 i0 62.5 1 72 26 100 1 216 1 169 239 WP_002623324.1 hypothetical protein [Cystobacter fuscus] diamond 216 89 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
31621032 31621032 PRJNA1196438_P_NODE_37456_length_293_cov_1.086364_g37030_i0 PRJNA1196438 37456 293 1.086364 3.18304652 Candidatus Fimimonas gallinarum 2840821 Bacteria Bacteria 122 2.45e-30   NR HIR66124.1 2840821 g37030 i0 62.9 1.98634812286689 97 36 99.3 0 292 2 122 218 HIR66124.1 hypothetical protein [Candidatus Fimimonas gallinarum] diamond 582 122 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Candidatus Fimimonas Candidatus Fimimonas gallinarum
31639987 31639987 PRJNA1196438_P_NODE_43656_length_283_cov_2.023810_g43229_i0 PRJNA1196438 43656 283 2.02381 5.7273823 Bacteria 2 Bacteria Bacteria 114 2.1600000000000003e-27   NR CCZ95421.1 1262867 g43229 i0 77.6 4.78091872791519 76 16 80.6 1 54 281 1 75 CCZ95421.1 lysine--tRNA ligase [Corallococcus sp. CAG:1435] diamond 1353 114 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. CAG:1435
31893053 31893053 PRJNA1196438_P_NODE_12537_length_312_cov_7.447699_g12111_i0 PRJNA1196438 12537 312 7.447699 23.23682088 Anaeromyxobacter 161492 Bacteria Bacteria 64.7 3.66e-11   NR OFX25745.1 1797238 g12111 i0 57.1 0.932692307692308 49 21 47.1 0 165 311 17 65 OFX25745.1 MAG: hypothetical protein A2V77_05535 [Anaeromyxobacter sp. RBG_16_69_14] diamond 291 64.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp. RBG_16_69_14
32146272 32146272 PRJNA1196438_P_NODE_32098_length_300_cov_3.343612_g31672_i0 PRJNA1196438 32098 300 3.343612 10.030836 Pseudomonadati 3379134 Bacteria Bacteria 51.6 5.58e-5   NR MDR1486949.1 2026735 g31672 i0 57.1 2.42 42 18 42 0 175 300 102 143 MDR1486949.1 ankyrin repeat domain-containing protein [Deltaproteobacteria bacterium] diamond 726 52 0.992307692307692 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32317416 32317416 PRJNA1196438_P_NODE_36419_length_294_cov_3.140271_g35993_i0 PRJNA1196438 36419 294 3.140271 9.23239674 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 93.6 4.41e-21   NR MCE3242386.1 2026735 g35993 i0 84 0.510204081632653 50 8 51 0 151 2 59 108 MCE3242386.1 phospholipase/Carboxylesterase [Deltaproteobacteria bacterium] diamond 150 93.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32809470 32809470 PRJNA1196438_P_NODE_65080_length_252_cov_0.871508_g64653_i0 PRJNA1196438 65080 252 0.871508 2.19620016 Pseudomonadati 3379134 Bacteria Bacteria 176 2.7899999999999998e-52   NR MCE3242470.1 2026735 g64653 i0 94 2.96428571428571 83 5 98.8 0 2 250 122 204 MCE3242470.1 fbpA 2 [Deltaproteobacteria bacterium] diamond 747 176 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;