RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA1196438", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 23 ✖

tax_kingdom 1

  • Bacillati · 23 ✖

tax_clade 1

bioproject 1

  • PRJNA1196438 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1597911 1597911 PRJNA1196438_P_NODE_55802_length_264_cov_2.764398_g55375_i0 PRJNA1196438 55802 264 2.764398 7.29801072 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 54.7 0.007   NTclustered gi|2874253741|emb|OY969584.1| 1672391 g55375 i0 94.286 0.462121212121212 35 2 13 0 160 194 2265328 2265362 MAG: uncultured Chloroflexia bacterium isolate MFD01299.bin.c.4 genome assembly, chromosome: 1 blastn 122 54.7 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
4150314 4150314 PRJNA1196438_P_NODE_64484_length_252_cov_2.340782_g64057_i0 PRJNA1196438 64484 252 2.340782 5.89877064 Chloroflexia bacterium 2448782 Bacteria Bacteria 99 6.78e-22   NR HUS16730.1 2448782 g64057 i0 65.9 1.01190476190476 85 27 100 2 1 252 194 277 HUS16730.1 non-homologous end-joining DNA ligase [Chloroflexia bacterium] diamond 255 99 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
6701504 6701504 PRJNA1196438_P_NODE_79306_length_235_cov_3.376543_g78879_i0 PRJNA1196438 79306 235 3.376543 7.93487605 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 200 7.11e-47   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g78879 i0 83.111 0.957446808510638 225 33 95 4 1 224 126824 126604 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 225 200 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
7976490 7976490 PRJNA1196438_P_NODE_42827_length_284_cov_3.317536_g42400_i0 PRJNA1196438 42827 284 3.317536 9.42180224 Chloroflexota bacterium 2026724 Bacteria Bacteria 86.3 5.95e-18   NR MBV9892651.1 2026724 g42400 i0 69.6 0.971830985915493 92 18 86.6 1 283 38 29 120 MBV9892651.1 hypothetical protein [Chloroflexota bacterium] diamond 276 86.3 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
18174837 18174837 PRJNA1196438_P_NODE_50615_length_272_cov_2.025126_g50188_i0 PRJNA1196438 50615 272 2.025126 5.50834272 Caldilineaceae bacterium 2614250 Bacteria Bacteria 60.2 1.49e-4   NTclustered gi|2893358382|emb|OZ220676.1| 2614250 g50188 i0 100 0.441176470588235 32 0 12 0 158 189 1354571 1354602 MAG: Caldilineaceae bacterium isolate 6911f4b3-f793-4dac-9473-b80504ec0e1d genome assembly, chromosome: 1 blastn 120 60.2 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium
18175134 18175134 PRJNA1196438_P_NODE_7195_length_382_cov_1.495146_g6773_i0 PRJNA1196438 7195 382 1.495146 5.71145772 uncultured Dehalococcoidia bacterium 498747 Bacteria Bacteria 60.2 2.18e-4   NTclustered gi|2518550964|emb|OX638324.1| 498747 g6773 i0 94.872 2.38219895287958 39 1 10 1 222 260 1682414 1682451 MAG: uncultured Dehalococcoidia bacterium isolate 3cc91b85-964c-4eee-822c-8c355d828f5f genome assembly, chromosome: 1 blastn 910 60.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
26882784 26882784 PRJNA1196438_P_NODE_12241_length_312_cov_10.891213_g11815_i0 PRJNA1196438 12241 312 10.891213 33.98058456 Thermoflexus 1495649 Bacteria Bacteria 90.9 1.07e-18   NR WP_303897221.1 1495649 g11815 i0 81.3 0.923076923076923 48 9 46.2 0 149 6 1015 1062 WP_303897221.1 MULTISPECIES: Eco57I restriction-modification methylase domain-containing protein [Thermoflexus] diamond 288 90.9 1 Bacteria   Bacillati Chloroflexota Thermoflexia Thermoflexales Thermoflexaceae Thermoflexus  
27736236 27736236 PRJNA1196438_P_NODE_84944_length_217_cov_5.451389_g84516_i0 PRJNA1196438 84944 217 5.451389 11.82951413 Chloroflexota bacterium 2026724 Bacteria Bacteria 132 3.4199999999999992e-34   NR HHY54861.1 2026724 g84516 i0 93.1 0.995391705069124 72 5 99.5 0 1 216 464 535 HHY54861.1 SulP family inorganic anion transporter [Chloroflexota bacterium] diamond 216 132 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
27893603 27893603 PRJNA1196438_P_NODE_14525_length_312_cov_4.426778_g14099_i0 PRJNA1196438 14525 312 4.426778 13.81154736 Candidatus Limnocylindria bacterium 3047546 Bacteria Bacteria 148 1.82e-42   NR HET8572119.1 3047546 g14099 i0 77.1 2.01923076923077 105 21 99 2 3 311 64 167 HET8572119.1 DRTGG domain-containing protein [Candidatus Limnocylindria bacterium] diamond 630 148 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria       Candidatus Limnocylindria bacterium
28544381 28544381 PRJNA1196438_P_NODE_55687_length_264_cov_3.685864_g55260_i0 PRJNA1196438 55687 264 3.685864 9.73068096 FCB group 1783270 Bacteria Bacteria 57.4 3.03e-7   NR TMC50304.1 2026724 g55260 i0 47.9 3.17045454545455 48 20 54.5 1 147 4 95 137 TMC50304.1 MAG: hypothetical protein E6J26_09970 [Chloroflexota bacterium] diamond 837 57.8 0.993079584775087 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
28556929 28556929 PRJNA1196438_P_NODE_15327_length_312_cov_4.058577_g14901_i0 PRJNA1196438 15327 312 4.058577 12.66276024 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 97.8 3.58e-22   NR HEX2173770.1 2026734 g14901 i0 78.7 3.00961538461538 61 9 58.7 1 184 2 68 124 HEX2173770.1 IS5 family transposase [Dehalococcoidia bacterium] diamond 939 97.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
28809078 28809078 PRJNA1196438_P_NODE_63948_length_253_cov_0.866667_g63521_i0 PRJNA1196438 63948 253 0.866667 2.19266751 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 118 4.47e-29   NR HLT84384.1 3069543 g63521 i0 79.5 0.984189723320158 83 17 98.4 0 252 4 160 242 HLT84384.1 histidine kinase [Phototrophicaceae bacterium] diamond 249 118 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium
29207380 29207380 PRJNA1196438_P_NODE_83009_length_228_cov_2.006452_g82582_i0 PRJNA1196438 83009 228 2.006452 4.57471056 Bacteria 2 Bacteria Bacteria 65.9 1.96e-10   NR TME12401.1 2026724 g82582 i0 47.2 6.63157894736842 72 35 93.4 2 217 5 140 209 TME12401.1 MAG: IS200/IS605 family element transposase accessory protein TnpB [Chloroflexota bacterium] diamond 1512 65.9 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
29409245 29409245 PRJNA1196438_P_NODE_69329_length_248_cov_0.891429_g68902_i0 PRJNA1196438 69329 248 0.891429 2.21074392 SAR202 cluster bacterium 2030829 Bacteria Bacteria 44.7 0.00827   NR MQF98045.1 2030829 g68902 i0 32.8 1.77822580645161 67 44 79.8 1 198 1 454 520 MQF98045.1 hypothetical protein [SAR202 cluster bacterium] diamond 441 44.7 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
29427979 29427979 PRJNA1196438_P_NODE_82329_length_229_cov_2.250000_g81902_i0 PRJNA1196438 82329 229 2.25 5.1525 Bacteria 2 Bacteria Bacteria 92 6.87e-21   NR MDZ7727693.1 2026734 g81902 i0 57.9 2.68558951965066 76 30 99.6 1 1 228 1 74 MDZ7727693.1 hypothetical protein [Dehalococcoidia bacterium] diamond 615 92 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
29491314 29491314 PRJNA1196438_P_NODE_69110_length_248_cov_1.702857_g68683_i0 PRJNA1196438 69110 248 1.702857 4.22308536 Flexilinea 1769713 Bacteria Bacteria 137 2.69e-38   NR MBQ6503336.1 2017390 g68683 i0 76.5 4.92338709677419 81 19 98 0 4 246 132 212 MBQ6503336.1 AzlC family ABC transporter permease [Flexilinea sp.] diamond 1221 137 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Flexilinea Flexilinea sp.
29914682 29914682 PRJNA1196438_P_NODE_11391_length_317_cov_1.905738_g10965_i0 PRJNA1196438 11391 317 1.905738 6.04118946 Chloroflexota bacterium 2026724 Bacteria Bacteria 169 9.91e-50   NR MEA3340924.1 2026724 g10965 i0 73.1 2.95268138801262 104 28 98.4 0 4 315 146 249 MEA3340924.1 bstEII [Chloroflexota bacterium] diamond 936 169 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30072417 30072417 PRJNA1196438_P_NODE_63212_length_253_cov_3.038889_g62785_i0 PRJNA1196438 63212 253 3.038889 7.68838917 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 132 4.42e-35   NR MEI6186819.1 2026734 g62785 i0 78 0.972332015810277 82 16 97.2 1 3 248 183 262 MEI6186819.1 IS630 family transposase [Dehalococcoidia bacterium] diamond 246 132 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
30294067 30294067 PRJNA1196438_P_NODE_59452_length_259_cov_1.677419_g59025_i0 PRJNA1196438 59452 259 1.677419 4.34451521 Anaerolineaceae bacterium 2024896 Bacteria Bacteria 59.3 1.71e-9   NR MBQ4514403.1 2024896 g59025 i0 62.2 0.428571428571429 37 14 42.9 0 145 255 1 37 MBQ4514403.1 hypothetical protein [Anaerolineaceae bacterium] diamond 111 59.3 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae   Anaerolineaceae bacterium
31020420 31020420 PRJNA1196438_P_NODE_19695_length_312_cov_3.066946_g19269_i0 PRJNA1196438 19695 312 3.066946 9.56887152 Anaerolineales bacterium 2073117 Bacteria Bacteria 89.4 2e-18   NR MCK5319140.1 2073117 g19269 i0 84 1.44230769230769 50 8 48.1 0 163 312 94 143 MCK5319140.1 hypothetical protein [Anaerolineales bacterium] diamond 450 89.4 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31336295 31336295 PRJNA1196438_P_NODE_47636_length_277_cov_1.524510_g47209_i0 PRJNA1196438 47636 277 1.52451 4.2228927 Chloroflexota bacterium 2026724 Bacteria Bacteria 49.7 1.93e-4   NR HBY93934.1 2026724 g47209 i0 64.6 0.855595667870036 79 18 74.7 2 209 3 1 79 HBY93934.1 IS66 family transposase [Chloroflexota bacterium] diamond 237 49.7 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
32146270 32146270 PRJNA1196438_P_NODE_20518_length_312_cov_2.958159_g20092_i0 PRJNA1196438 20518 312 2.958159 9.22945608 Bacteria 2 Bacteria Bacteria 95.1 1e-20   NR HUS13787.1 2448782 g20092 i0 81.8 4.79807692307692 55 10 52.9 0 146 310 204 258 HUS13787.1 IS110 family transposase [Chloroflexia bacterium] diamond 1497 95.1 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium
32475507 32475507 PRJNA1196438_P_NODE_34919_length_297_cov_3.151786_g34493_i0 PRJNA1196438 34919 297 3.151786 9.36080442 Chloroflexia bacterium 2448782 Bacteria Bacteria 77.4 4.42e-14   NR HET9493199.1 2448782 g34493 i0 68 1.06060606060606 50 16 50.5 0 296 147 148 197 HET9493199.1 glucoamylase family protein [Chloroflexia bacterium] diamond 315 77.4 1 Bacteria   Bacillati Chloroflexota Chloroflexia       Chloroflexia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;