RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1196438", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1196438 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28304166 28304166 PRJNA1196438_P_NODE_29106_length_301_cov_3.263158_g28680_i0 PRJNA1196438 29106 301 3.263158 9.82210558 Armatimonadota bacterium 2033014 Bacteria Bacteria 55.8 1.78e-6   NR MBI5831906.1 2033014 g28680 i0 67.3 0.488372093023256 49 16 48.8 0 4 150 196 244 MBI5831906.1 radical SAM protein [Armatimonadota bacterium] diamond 147 55.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29775414 29775414 PRJNA1196438_P_NODE_45151_length_281_cov_1.240385_g44724_i0 PRJNA1196438 45151 281 1.240385 3.48548185 PVC group 1783257 Bacteria Bacteria 97.4 6.160000000000001e-22   NR MBC8103291.1 2033014 g44724 i0 55.9 3.97153024911032 93 40 99.3 1 3 281 38 129 MBC8103291.1 tyrosine-type recombinase/integrase [Armatimonadota bacterium] diamond 1116 97.4 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
31968958 31968958 PRJNA1196438_P_NODE_12478_length_312_cov_7.794979_g12052_i0 PRJNA1196438 12478 312 7.794979 24.32033448 Armatimonadota bacterium 2033014 Bacteria Bacteria 107 3.4e-25   NR MCL6533381.1 2033014 g12052 i0 100 0.480769230769231 50 0 48.1 0 2 151 200 249 MCL6533381.1 hypothetical protein [Armatimonadota bacterium] diamond 150 107 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32727767 32727767 PRJNA1196438_P_NODE_88440_length_198_cov_9.688000_g88012_i0 PRJNA1196438 88440 198 9.688 19.18224 Armatimonadota bacterium 2033014 Bacteria Bacteria 46.2 0.00124   NR MEN6373127.1 2033014 g88012 i0 70 0.454545454545455 30 9 45.5 0 109 198 216 245 MEN6373127.1 hypothetical protein [Armatimonadota bacterium] diamond 90 46.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;