RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1196438", tax_clade = "Sar" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1196438 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28291432 28291432 PRJNA1196438_P_NODE_48346_length_276_cov_1.359606_g47919_i0 PRJNA1196438 48346 276 1.359606 3.75251256 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 93.6 6.15e-21   NR YP_010227897.1 41456 g47919 i0 51.1 32.1521739130435 92 42 96.7 1 8 274 88 179 YP_010227897.1 cytochrome oxidase subunit 2 [Polymyxa betae] diamond 8874 93.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Polymyxa Polymyxa betae
28430585 28430585 PRJNA1196438_P_NODE_3286_length_535_cov_4.515152_g2878_i0 PRJNA1196438 3286 535 4.515152 24.1560632 Arachnula sp. CL12 862247 SAR_Eukaryotes SAR_Eukaryotes 183 2.91e-52   NR ADK90073.1 862247 g2878 i0 56 2.50654205607477 150 59 84.1 2 534 85 295 437 ADK90073.1 elongation factor 1 alpha, partial [Arachnula sp. CL12] diamond 1341 183 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;