RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196438", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1196438 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27641357 27641357 PRJNA1196438_P_NODE_50404_length_272_cov_2.929648_g49977_i0 PRJNA1196438 50404 272 2.929648 7.96864256 Eunotia naegelii 1458866 SAR_Eukaryotes SAR_Eukaryotes 64.3 1.38e-9   NR YP_009495442.1 1458866 g49977 i0 71.1 0.496323529411765 45 13 49.6 0 7 141 177 221 YP_009495442.1 NADH dehydrogenase subunit 2 [Eunotia naegelii] diamond 135 64.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Eunotiales Eunotiaceae Eunotia Eunotia naegelii
29093706 29093706 PRJNA1196438_P_NODE_50608_length_272_cov_2.040201_g50181_i0 PRJNA1196438 50608 272 2.040201 5.54934672 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 83.2 2.62e-18   NR KAI2500408.1 210448 g50181 i0 86 3.94852941176471 50 7 55.1 0 272 123 51 100 KAI2500408.1 mttA/Hcf106 family [Fragilaria crotonensis] diamond 1074 83.2 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;