RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1196438", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1196438 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26914193 26914193 PRJNA1196438_P_NODE_46282_length_279_cov_1.514563_g45855_i0 PRJNA1196438 46282 279 1.514563 4.22563077 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 165 4.41e-45   NR MBO7687456.1 2212473 g45855 i0 78.3 1.97849462365591 92 20 98.9 0 277 2 275 366 MBO7687456.1 hypothetical protein [Kiritimatiellia bacterium] diamond 552 165 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27167147 27167147 PRJNA1196438_P_NODE_64842_length_252_cov_1.519553_g64415_i0 PRJNA1196438 64842 252 1.519553 3.82927356 Kiritimatiellota bacterium 2599938 Bacteria Bacteria 45.8 0.00349   NR MCL1920885.1 2599938 g64415 i0 32.5 1.94047619047619 80 49 89.3 1 28 252 342 421 MCL1920885.1 hypothetical protein [Kiritimatiellota bacterium] diamond 489 45.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota         Kiritimatiellota bacterium
28146561 28146561 PRJNA1196438_P_NODE_79405_length_235_cov_2.864198_g78978_i0 PRJNA1196438 79405 235 2.864198 6.7308653 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 52.4 1.19e-5   NR MBP8655906.1 2212473 g78978 i0 76.9 0.331914893617021 26 6 33.2 0 205 128 257 282 MBP8655906.1 FAD-dependent thymidylate synthase [Kiritimatiellia bacterium] diamond 78 52.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
29851450 29851450 PRJNA1196438_P_NODE_43671_length_283_cov_1.957143_g43244_i0 PRJNA1196438 43671 283 1.957143 5.53871469 Candidatus Colisoma equi 3083071 Bacteria Bacteria 43.5 0.0331   NR MBQ0033269.1 3083071 g43244 i0 47.1 0.540636042402827 51 25 54.1 2 130 282 242 290 MBQ0033269.1 glycosyltransferase [Candidatus Colisoma equi] diamond 153 43.5 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia     Candidatus Colisoma Candidatus Colisoma equi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;