contig_metadata
14 rows where bioproject = "PRJNA1196438", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5426477 | 5426477 | PRJNA1196438_P_NODE_56045_length_264_cov_1.633508_g55618_i0 | PRJNA1196438 | 56045 | 264 | 1.633508 | 4.31246112 | Fibrobacter succinogenes | 833 | Bacteria | Bacteria | 344 | 3.55e-90 | NTclustered | gi|261370870|gb|CP001792.1| | 59374 | g55618 | i0 | 90.152 | 2 | 264 | 26 | 100 | 0 | 1 | 264 | 2046751 | 2046488 | Fibrobacter succinogenes subsp. succinogenes S85, complete genome | blastn | 528 | 344 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter succinogenes | |
| 16345965 | 16345965 | PRJNA1196438_P_NODE_6813_length_389_cov_4.170886_g6391_i0 | PRJNA1196438 | 6813 | 389 | 4.170886 | 16.22474654 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 99.4 | 8.959999999999999e-23 | NR | MCQ2106959.1 | 35828 | g6391 | i0 | 100 | 1.27249357326478 | 55 | 0 | 42.4 | 0 | 223 | 387 | 1 | 55 | MCQ2106959.1 hypothetical protein [Fibrobacter sp.] | diamond | 495 | 99.4 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 26711308 | 26711308 | PRJNA1196438_P_NODE_69461_length_248_cov_0.891429_g69034_i0 | PRJNA1196438 | 69461 | 248 | 0.891429 | 2.21074392 | FCB group | 1783270 | Bacteria | Bacteria | 129 | 3.25e-36 | NR | WP_072799701.1 | 1896224 | g69034 | i0 | 79.5 | 3.53225806451613 | 73 | 15 | 88.3 | 0 | 248 | 30 | 67 | 139 | WP_072799701.1 adenylyltransferase/cytidyltransferase family protein [Fibrobacter sp. UWT2] | diamond | 876 | 129 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. UWT2 | |
| 26723836 | 26723836 | PRJNA1196438_P_NODE_49081_length_274_cov_4.054726_g48654_i0 | PRJNA1196438 | 49081 | 274 | 4.054726 | 11.10994924 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 150 | 5.4799999999999996e-42 | NR | WP_300186788.1 | 35828 | g48654 | i0 | 87.1 | 2.79197080291971 | 85 | 11 | 93.1 | 0 | 1 | 255 | 256 | 340 | WP_300186788.1 FecCD family ABC transporter permease [Fibrobacter sp.] | diamond | 765 | 150 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 26870260 | 26870260 | PRJNA1196438_P_NODE_62101_length_255_cov_1.714286_g61674_i0 | PRJNA1196438 | 62101 | 255 | 1.714286 | 4.3714293 | Fibrobacter | 832 | Bacteria | Bacteria | 179 | 1.17e-53 | NR | WP_072978318.1 | 1896210 | g61674 | i0 | 98.8 | 2.96470588235294 | 84 | 1 | 98.8 | 0 | 2 | 253 | 70 | 153 | WP_072978318.1 family 16 glycosylhydrolase [Fibrobacter sp. UWH4] | diamond | 756 | 179 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. UWH4 | |
| 28051568 | 28051568 | PRJNA1196438_P_NODE_15005_length_312_cov_4.188285_g14579_i0 | PRJNA1196438 | 15005 | 312 | 4.188285 | 13.0674492 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 191 | 3.2999999999999994e-56 | NR | WP_407451134.1 | 35828 | g14579 | i0 | 71.2 | 1.33653846153846 | 139 | 4 | 99 | 1 | 2 | 310 | 89 | 227 | WP_407451134.1 FISUMP domain-containing protein [Fibrobacter sp.] | diamond | 417 | 191 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 29062121 | 29062121 | PRJNA1196438_P_NODE_52208_length_270_cov_1.512690_g51781_i0 | PRJNA1196438 | 52208 | 270 | 1.51269 | 4.084263 | Fibrobacter sp. UWB13 | 1896204 | Bacteria | Bacteria | 148 | 3.27e-39 | NR | WP_085491624.1 | 1896204 | g51781 | i0 | 85.4 | 0.988888888888889 | 89 | 11 | 98.9 | 1 | 2 | 268 | 130 | 216 | WP_085491624.1 FtsK/SpoIIIE domain-containing protein [Fibrobacter sp. UWB13] | diamond | 267 | 148 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. UWB13 | |
| 29819581 | 29819581 | PRJNA1196438_P_NODE_88011_length_200_cov_8.110236_g87583_i0 | PRJNA1196438 | 88011 | 200 | 8.110236 | 16.220472 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 67.8 | 2.75e-11 | NR | MCF0224100.1 | 35828 | g87583 | i0 | 39.4 | 0.99 | 66 | 38 | 99 | 1 | 200 | 3 | 114 | 177 | MCF0224100.1 nucleotidyltransferase family protein [Fibrobacter sp.] | diamond | 198 | 67.8 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 30628327 | 30628327 | PRJNA1196438_P_NODE_14533_length_312_cov_4.422594_g14107_i0 | PRJNA1196438 | 14533 | 312 | 4.422594 | 13.79849328 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 60.1 | 6.15e-8 | NR | MCQ2101786.1 | 35828 | g14107 | i0 | 61.2 | 0.903846153846154 | 49 | 19 | 47.1 | 0 | 164 | 310 | 11 | 59 | MCQ2101786.1 glycosyltransferase [Fibrobacter sp.] | diamond | 282 | 60.1 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 31114912 | 31114912 | PRJNA1196438_P_NODE_65295_length_251_cov_4.859551_g64868_i0 | PRJNA1196438 | 65295 | 251 | 4.859551 | 12.19747301 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 107 | 7.15e-25 | NR | MCF0224128.1 | 35828 | g64868 | i0 | 61 | 1.97211155378486 | 82 | 32 | 98 | 0 | 251 | 6 | 152 | 233 | MCF0224128.1 response regulator [Fibrobacter sp.] | diamond | 495 | 107 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 31387190 | 31387190 | PRJNA1196438_P_NODE_69716_length_247_cov_3.574713_g69289_i0 | PRJNA1196438 | 69716 | 247 | 3.574713 | 8.82954111 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 170 | 7.71e-50 | NR | MCQ2101564.1 | 35828 | g69289 | i0 | 98.8 | 1.9919028340081 | 82 | 1 | 99.6 | 0 | 1 | 246 | 172 | 253 | MCQ2101564.1 site-specific integrase [Fibrobacter sp.] | diamond | 492 | 170 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 31716013 | 31716013 | PRJNA1196438_P_NODE_68957_length_248_cov_1.782857_g68530_i0 | PRJNA1196438 | 68957 | 248 | 1.782857 | 4.42148536 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 151 | 3.58e-42 | NR | WP_405323887.1 | 35828 | g68530 | i0 | 81.7 | 0.991935483870968 | 82 | 15 | 99.2 | 0 | 246 | 1 | 199 | 280 | WP_405323887.1 restriction endonuclease subunit S [Fibrobacter sp.] | diamond | 246 | 151 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. | |
| 32412160 | 32412160 | PRJNA1196438_P_NODE_66999_length_250_cov_1.570621_g66572_i0 | PRJNA1196438 | 66999 | 250 | 1.570621 | 3.9265525 | uncultured Fibrobacter sp. | 261512 | Bacteria | Bacteria | 74.3 | 3.17e-13 | NR | WP_297944426.1 | 261512 | g66572 | i0 | 43.2 | 0.888 | 74 | 42 | 88.8 | 0 | 243 | 22 | 784 | 857 | WP_297944426.1 RecQ family ATP-dependent DNA helicase [uncultured Fibrobacter sp.] | diamond | 222 | 74.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | uncultured Fibrobacter sp. | |
| 32507242 | 32507242 | PRJNA1196438_P_NODE_70259_length_247_cov_1.678161_g69832_i0 | PRJNA1196438 | 70259 | 247 | 1.678161 | 4.14505767 | Fibrobacter sp. | 35828 | Bacteria | Bacteria | 69.3 | 5.56e-13 | NR | WP_405332665.1 | 35828 | g69832 | i0 | 73.2 | 1.49392712550607 | 41 | 11 | 49.8 | 0 | 4 | 126 | 74 | 114 | WP_405332665.1 hypothetical protein [Fibrobacter sp.] | diamond | 369 | 69.3 | 1 | Bacteria | FCB group | Pseudomonadati | Fibrobacterota | Fibrobacteria | Fibrobacterales | Fibrobacteraceae | Fibrobacter | Fibrobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;