RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1196384" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1597288 1597288 PRJNA1196384_S_NODE_3762_length_204_cov_1.389222_g3698_i0 PRJNA1196384 3762 204 1.389222 2.83401288 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 94.7 3.4300000000000004e-21   NR CEO96023.1 37360 g3698 i0 66.2 1 68 22 98.5 1 3 203 174 241 CEO96023.1 hypothetical protein PBRA_004713 [Plasmodiophora brassicae] diamond 204 94.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
18174315 18174315 PRJNA1196384_S_NODE_4955_length_182_cov_2.931034_g4891_i0 PRJNA1196384 4955 182 2.931034 5.33448188 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 73.9 2.76e-14   NR CEP01997.1 37360 g4891 i0 63.5 1.73076923076923 52 19 85.7 0 181 26 80 131 CEP01997.1 hypothetical protein PBRA_002262 [Plasmodiophora brassicae] diamond 315 73.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
20724026 20724026 PRJNA1196384_S_NODE_2737_length_234_cov_5.390863_g2673_i0 PRJNA1196384 2737 234 5.390863 12.61461942 Arachnula sp. CL22 862246 SAR_Eukaryotes SAR_Eukaryotes 191 4.26e-44   NTclustered gi|301014696|gb|GQ377694.1| 862246 g2673 i0 85.027 51.6025641025641 187 28 80 0 48 234 291 105 Arachnula sp. CL22 ribosomal protein S23a (rps23a) mRNA, partial cds blastn 12075 191 1 Eukaryota Sar   Endomyxa   Vampyrellida Leptophryidae Arachnula Arachnula sp. CL22
27059812 27059812 PRJNA1196384_S_NODE_3922_length_200_cov_1.650307_g3858_i0 PRJNA1196384 3922 200 1.650307 3.300614 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 74.3 8.77e-16   NR CEO99669.1 37360 g3858 i0 78.7 2.835 47 9 70.5 1 200 60 14 59 CEO99669.1 hypothetical protein PBRA_007402 [Plasmodiophora brassicae] diamond 567 74.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28272410 28272410 PRJNA1196384_S_NODE_4886_length_183_cov_2.363014_g4822_i0 PRJNA1196384 4886 183 2.363014 4.32431562 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 81.6 5.31e-18   NR CEP01632.1 37360 g4822 i0 71.7 0.983606557377049 60 17 98.4 0 4 183 59 118 CEP01632.1 hypothetical protein PBRA_008575 [Plasmodiophora brassicae] diamond 180 81.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30388833 30388833 PRJNA1196384_S_NODE_4153_length_195_cov_2.107595_g4089_i0 PRJNA1196384 4153 195 2.107595 4.10981025 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 92 1.69e-21   NR CEO95143.1 37360 g4089 i0 64.1 1.95384615384615 64 23 98.5 0 194 3 52 115 CEO95143.1 hypothetical protein PBRA_003909 [Plasmodiophora brassicae] diamond 381 92 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31336273 31336273 PRJNA1196384_S_NODE_4376_length_191_cov_1.740260_g4312_i0 PRJNA1196384 4376 191 1.74026 3.3238966 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 52 2.49e-6   NR CEP03597.1 37360 g4312 i0 44.2 0.816753926701571 52 29 81.7 0 35 190 57 108 CEP03597.1 hypothetical protein PBRA_009482 [Plasmodiophora brassicae] diamond 156 52 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31810886 31810886 PRJNA1196384_S_NODE_657_length_466_cov_2.216783_g594_i0 PRJNA1196384 657 466 2.216783 10.33020878 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 152 5.799999999999998e-44   NR CEO96540.1 37360 g594 i0 57.9 16.4034334763948 133 55 85.6 1 2 400 11 142 CEO96540.1 hypothetical protein PBRA_005149 [Plasmodiophora brassicae] diamond 7644 152 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32032379 32032379 PRJNA1196384_S_NODE_7118_length_159_cov_2.163934_g7054_i0 PRJNA1196384 7118 159 2.163934 3.44065506 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 70.1 1.25e-13   NR CEP01632.1 37360 g7054 i0 69.2 0.981132075471698 52 16 98.1 0 158 3 11 62 CEP01632.1 hypothetical protein PBRA_008575 [Plasmodiophora brassicae] diamond 156 70.1 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;