RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1196384" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA1196384 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1597322 1597322 PRJNA1196384_S_NODE_542_length_507_cov_3.936170_g480_i0 PRJNA1196384 542 507 3.93617 19.9563819 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 234 5.94e-76   NR XP_004368153.1 1257118 g480 i0 72 1.84615384615385 157 39 89.9 2 507 52 5 161 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 936 234 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5425912 5425912 PRJNA1196384_S_NODE_6445_length_165_cov_1.218750_g6381_i0 PRJNA1196384 6445 165 1.21875 2.0109375 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 104 3.76e-18   NTclustered gi|470483818|ref|XM_004343959.1| 1257118 g6381 i0 78.659 33.7393939393939 164 29 99 2 1 164 187 344 Acanthamoeba castellanii str. Neff Vtype ATPase, C subunit (ACA1_053290), partial mRNA blastn 5567 104 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
11801246 11801246 PRJNA1196384_S_NODE_5570_length_174_cov_2.795620_g5506_i0 PRJNA1196384 5570 174 2.79562 4.8643788 Paravannella minima 1443144 Discosea other_Eukaryota 322 1.01e-83   NTclustered gi|571331049|gb|KF895376.1| 1443144 g5506 i0 100 93.5747126436782 174 0 100 0 1 174 490 317 Paravannella minima strain CCAP 1533/1 clone 1 actin gene, partial cds blastn 16282 322 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Paravannella Paravannella minima
18174263 18174263 PRJNA1196384_S_NODE_1135_length_362_cov_2.815385_g1071_i0 PRJNA1196384 1135 362 2.815385 10.1916937 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 175 3.4899999999999995e-54   NR XP_004339588.1 1257118 g1071 i0 85.3 0.845303867403315 102 15 84.5 0 308 3 8 109 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 306 175 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
20724006 20724006 PRJNA1196384_S_NODE_1137_length_362_cov_1.923077_g1073_i0 PRJNA1196384 1137 362 1.923077 6.96153874 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 154 1.5499999999999998e-42   NR XP_004341586.1 1257118 g1073 i0 67.3 1.61602209944751 101 33 83.7 0 58 360 245 345 XP_004341586.1 elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff] diamond 585 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27072411 27072411 PRJNA1196384_S_NODE_4642_length_187_cov_1.293333_g4578_i0 PRJNA1196384 4642 187 1.293333 2.41853271 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 95.9 3.78e-22   NR XP_004341414.1 1257118 g4578 i0 69.4 0.994652406417112 62 19 99.5 0 186 1 5 66 XP_004341414.1 Factin-capping protein subunit alpha-2, putative [Acanthamoeba castellanii str. Neff] diamond 186 95.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29219982 29219982 PRJNA1196384_S_NODE_6449_length_165_cov_1.210938_g6385_i0 PRJNA1196384 6449 165 1.210938 1.9980477 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 6.34e-20   NR XP_004351535.1 1257118 g6385 i0 77.8 0.981818181818182 54 12 98.2 0 4 165 26 79 XP_004351535.1 actinrelated protein ARPC3, putative [Acanthamoeba castellanii str. Neff] diamond 162 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29535551 29535551 PRJNA1196384_S_NODE_3390_length_213_cov_1.301136_g3326_i0 PRJNA1196384 3390 213 1.301136 2.77141968 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.6 1.81e-5   NR XP_004337281.1 1257118 g3326 i0 48.9 0.633802816901408 45 23 63.4 0 212 78 378 422 XP_004337281.1 calponin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 135 51.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30040866 30040866 PRJNA1196384_S_NODE_2191_length_262_cov_3.644444_g2127_i0 PRJNA1196384 2191 262 3.644444 9.54844328 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 50.8 6.53e-5   NR ALV66539.1 5755 g2127 i0 50.9 1.95801526717557 57 28 65.3 0 246 76 392 448 ALV66539.1 arginine methyltransferase 5 [Acanthamoeba castellanii] diamond 513 50.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31020412 31020412 PRJNA1196384_S_NODE_4575_length_188_cov_1.403974_g4511_i0 PRJNA1196384 4575 188 1.403974 2.63947112 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 81.3 1.32e-16   NR XP_004355015.1 1257118 g4511 i0 63.9 1.93085106382979 61 22 97.3 0 188 6 208 268 XP_004355015.1 Factin-capping protein subunit beta, putative [Acanthamoeba castellanii str. Neff] diamond 363 81.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;