RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1196384" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1196384 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9250553 9250553 PRJNA1196384_S_NODE_1628_length_307_cov_2.662963_g1564_i0 PRJNA1196384 1628 307 2.662963 8.17529641 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 180 1.26e-40   NTclustered gi|2874254132|emb|OY970217.1| 1672391 g1564 i0 80.833 28.9348534201954 240 36 76 9 6 239 3521233 3520998 MAG: uncultured Chloroflexia bacterium isolate MFD05684.bin.1.130 genome assembly, chromosome: 1 blastn 8883 180 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
13796543 13796543 PRJNA1196384_S_NODE_7111_length_159_cov_2.475410_g7047_i0 PRJNA1196384 7111 159 2.47541 3.9359019 Bacteria 2 Bacteria Bacteria 189 9.62e-44   NTclustered gi|2531963199|emb|OY282442.1| 498747 g7047 i0 95.726 109.176100628931 117 5 74 0 12 128 334308 334424 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 17359 189 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
30862311 30862311 PRJNA1196384_S_NODE_3254_length_216_cov_1.916201_g3190_i0 PRJNA1196384 3254 216 1.916201 4.13899416 Ktedonobacterales bacterium 2306968 Bacteria Bacteria 81.6 1.62e-16   NR HEY7974364.1 2306968 g3190 i0 60.3 1.98611111111111 73 19 91.7 2 205 8 188 257 HEY7974364.1 alpha/beta hydrolase [Ktedonobacterales bacterium] diamond 429 81.6 1 Bacteria   Bacillati Chloroflexota Ktedonobacteria Ktedonobacterales     Ktedonobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;