RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196384", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1196384 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3593601 3593601 PRJNA1196384_S_NODE_6283_length_166_cov_2.565891_g6219_i0 PRJNA1196384 6283 166 2.565891 4.25937906 Desulfocapsa 53318 Bacteria Bacteria 139 1.04e-28   NTclustered gi|485099199|ref|NR_102592.1| 65555 g6219 i0 82.249 272.638554216867 169 23 100 7 1 166 722 558 Desulfocapsa sulfexigens strain SB164P1 23S ribosomal RNA gene, complete sequence blastn 45258 139 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfocapsaceae Desulfocapsa Desulfocapsa sulfexigens
30040867 30040867 PRJNA1196384_S_NODE_3791_length_203_cov_2.795181_g3727_i0 PRJNA1196384 3791 203 2.795181 5.67421743 Desulfocurvus vexinensis 399548 Bacteria Bacteria 89 2.8e-21   NR WP_028587017.1 399548 g3727 i0 68.8 0.945812807881773 64 20 94.6 0 3 194 15 78 WP_028587017.1 RNA recognition motif domain-containing protein [Desulfocurvus vexinensis] diamond 192 89 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfocurvus Desulfocurvus vexinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;