RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196384", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21999492 21999492 PRJNA1196384_S_NODE_5878_length_171_cov_1.447761_g5814_i0 PRJNA1196384 5878 171 1.447761 2.47567131 Peredibacter starrii 28202 Bacteria Bacteria 255 1.02e-63   NTclustered gi|2631252187|gb|CP139487.1| 28202 g5814 i0 93.567 100.754385964912 171 11 100 0 1 171 512186 512016 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 17229 255 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
24548804 24548804 PRJNA1196384_S_NODE_4900_length_183_cov_1.732877_g4836_i0 PRJNA1196384 4900 183 1.732877 3.17116491 Peredibacter starrii 28202 Bacteria Bacteria 268 1.4199999999999999e-67   NTclustered gi|2631252187|gb|CP139487.1| 28202 g4836 i0 94.767 39.344262295082 172 9 94 0 1 172 511012 510841 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 7200 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;