RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196384", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31715967 31715967 PRJNA1196384_S_NODE_5217_length_179_cov_1.345070_g5153_i0 PRJNA1196384 5217 179 1.34507 2.4076753 Acidobacteriota bacterium 1978231 Bacteria Bacteria 43.5 0.00848   NR HSW40003.1 1978231 g5153 i0 37.7 1.02234636871508 61 35 97.2 2 178 5 274 334 HSW40003.1 metallopeptidase TldD-related protein [Acidobacteriota bacterium] diamond 183 43.5 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32127449 32127449 PRJNA1196384_S_NODE_3098_length_221_cov_1.358696_g3034_i0 PRJNA1196384 3098 221 1.358696 3.00271816 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 56.6 3.19e-7   NR MFN6962133.1 2283092 g3034 i0 70.6 1.41176470588235 34 10 46.2 0 3 104 279 312 MFN6962133.1 zinc metalloprotease [Pyrinomonadaceae bacterium] diamond 312 56.6 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;