RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1196384", tax_clade = "Bacteria candidate phyla" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1196384 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23995284 23995284 PRJNA1196384_S_NODE_59_length_1155_cov_4.627907_g35_i0 PRJNA1196384 59 1155 4.627907 53.45232585 Bacteria 2 Bacteria Bacteria 108 1.9499999999999994e-23   NR OGY48951.1 1797540 g35 i0 37.1 1.19480519480519 229 128 59.5 6 741 55 9 221 OGY48951.1 MAG: hypothetical protein A3B89_04535 [Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_02_FULL_40_13] diamond 1380 109 0.990825688073395 Bacteria Bacteria candidate phyla   Candidatus Buchananiibacteriota         Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_02_FULL_40_13
29346194 29346194 PRJNA1196384_S_NODE_7429_length_157_cov_1.283333_g7365_i0 PRJNA1196384 7429 157 1.283333 2.01483281 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 48.1 1.38e-4   NR HET8671245.1 2973664 g7365 i0 43.8 0.917197452229299 48 24 91.7 1 149 6 66 110 HET8671245.1 kelch repeat-containing protein [Candidatus Saccharimonadales bacterium] diamond 144 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;