RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1195551" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1195551 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7975907 7975907 PRJNA1195551_S_NODE_20347_length_222_cov_1.202312_g19994_i0 PRJNA1195551 20347 222 1.202312 2.66913264 Pendulispora albinea 2741071 Bacteria Bacteria 54.7 0.005   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g19994 i0 100 0.130630630630631 29 0 13 0 102 130 6904058 6904086 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
26723803 26723803 PRJNA1195551_S_NODE_34121_length_174_cov_2.912000_g33768_i0 PRJNA1195551 34121 174 2.912 5.06688 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42 0.0272   NR RLB60749.1 2026735 g33768 i0 48.8 0.741379310344828 43 22 74.1 0 173 45 177 219 RLB60749.1 MAG: hypothetical protein DRI90_12965, partial [Deltaproteobacteria bacterium] diamond 129 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27514836 27514836 PRJNA1195551_S_NODE_18523_length_231_cov_3.296703_g18170_i0 PRJNA1195551 18523 231 3.296703 7.61538393 Archangium violaceum 83451 Bacteria Bacteria 43.9 0.0125   NR WP_203405851.1 83451 g18170 i0 34.2 0.948051948051948 73 47 93.5 1 225 10 7 79 WP_203405851.1 lytic polysaccharide monooxygenase [Archangium violaceum] diamond 219 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
29251199 29251199 PRJNA1195551_S_NODE_34109_length_174_cov_3.328000_g33756_i0 PRJNA1195551 34109 174 3.328 5.79072 Polyangiaceae bacterium 2268199 Bacteria Bacteria 41.2 0.05   NR MCL2823592.1 2268199 g33756 i0 40.4 0.810344827586207 47 28 81 0 17 157 193 239 MCL2823592.1 hypothetical protein [Polyangiaceae bacterium] diamond 141 41.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29661422 29661422 PRJNA1195551_S_NODE_42990_length_156_cov_4.214953_g42637_i0 PRJNA1195551 42990 156 4.214953 6.57532668 Polyangiaceae bacterium 2268199 Bacteria Bacteria 41.6 0.029   NR HSQ62717.1 2268199 g42637 i0 47.7 0.846153846153846 44 19 84.6 1 3 134 109 148 HSQ62717.1 ATP-binding protein [Polyangiaceae bacterium] diamond 132 41.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29851429 29851429 PRJNA1195551_S_NODE_28151_length_191_cov_1.098592_g27798_i0 PRJNA1195551 28151 191 1.098592 2.09831072 Minicystis rosea 888845 Bacteria Bacteria 42.4 0.0256   NR APR78038.1 888845 g27798 i0 43.5 0.722513089005236 46 18 72.3 1 46 183 170 207 APR78038.1 serine/threonine kinase [Minicystis rosea] diamond 138 42.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
31715965 31715965 PRJNA1195551_S_NODE_23997_length_206_cov_1.324841_g23644_i0 PRJNA1195551 23997 206 1.324841 2.72917246 Myxococcota bacterium 2818507 Bacteria Bacteria 84.3 1.59e-17   NR MEQ1564989.1 2818507 g23644 i0 73.6 5.40291262135922 53 14 77.2 0 205 47 249 301 MEQ1564989.1 arginase [Myxococcota bacterium] diamond 1113 84.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;