RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1195551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1195551 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11246331 11246331 PRJNA1195551_S_NODE_14909_length_253_cov_5.553922_g14556_i0 PRJNA1195551 14909 253 5.553922 14.05142266 Borrelia 138 Bacteria Bacteria 52.8 0.023   NTclustered gi|2668652688|gb|CP129313.1| 142 g14556 i0 100 0.221343873517787 28 0 11 0 151 178 11682 11655 Borrelia turicatae strain BTCAM1 plasmid lp32, complete sequence blastn 56 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borrelia Borrelia turicatae
30388830 30388830 PRJNA1195551_S_NODE_24253_length_205_cov_1.000000_g23900_i0 PRJNA1195551 24253 205 1 2.05 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 43.5 0.0121   NR TVQ25792.1 1898206 g23900 i0 41.5 0.6 41 24 60 0 202 80 333 373 TVQ25792.1 MAG: cobyrinic acid a,c-diamide synthase [Spirochaetaceae bacterium] diamond 123 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;