RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1195551", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1195551 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28367196 28367196 PRJNA1195551_S_NODE_22786_length_211_cov_1.709877_g22433_i0 PRJNA1195551 22786 211 1.709877 3.60784047 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 41.6 0.0444   NR HEY4574901.1 2651171 g22433 i0 46.4 0.796208530805687 56 28 79.6 1 8 175 47 100 HEY4574901.1 YbhN family protein [Thermoanaerobaculia bacterium] diamond 168 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28935736 28935736 PRJNA1195551_S_NODE_43728_length_154_cov_5.942857_g43375_i0 PRJNA1195551 43728 154 5.942857 9.15199978 Granulicella aggregans 474949 Bacteria Bacteria 42 0.0107   NR WP_263374704.1 474949 g43375 i0 34 0.915584415584416 47 27 91.6 1 12 152 64 106 WP_263374704.1 hypothetical protein [Granulicella aggregans] diamond 141 42 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella aggregans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;