RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1195551", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1195551 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2318437 2318437 PRJNA1195551_S_NODE_24922_length_202_cov_2.718954_g24569_i0 PRJNA1195551 24922 202 2.718954 5.49228708 Metazoa 33208 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|1826618092|ref|XM_033241999.1| 1529436 g24569 i0 100 0.584158415841584 30 0 15 0 172 201 5172 5143 PREDICTED: Anneissia japonica uncharacterized LOC117101883 (LOC117101883), mRNA blastn 118 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
21999291 21999291 PRJNA1195551_S_NODE_13798_length_261_cov_3.273585_g13445_i0 PRJNA1195551 13798 261 3.273585 8.54405685 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 62.1 3.95e-5   NTclustered gi|1752399095|ref|XM_797036.5| 7668 g13445 i0 81.25 0.306513409961686 80 12 30 2 159 235 2313 2234 PREDICTED: Strongylocentrotus purpuratus heat shock cognate 71 kDa protein (LOC576276), mRNA blastn 80 62.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
29080996 29080996 PRJNA1195551_S_NODE_9448_length_301_cov_1.702381_g9095_i0 PRJNA1195551 9448 301 1.702381 5.12416681 root 1 Root_unresolved Root_unresolved 47.4 0.00172   NR XP_030829484.1 7668 g9095 i0 36.8 1.66445182724252 68 40 64.8 2 294 100 116 183 XP_030829484.1 delta-like protein B [Strongylocentrotus purpuratus] diamond 501 47.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
31734775 31734775 PRJNA1195551_S_NODE_4577_length_400_cov_4.122507_g4224_i0 PRJNA1195551 4577 400 4.122507 16.490028 Metazoa 33208 Echinodermata other_Eukaryota 72.4 4.27e-12   NR XP_041481762.1 7654 g4224 i0 38.2 6.7575 123 66 89.3 3 398 42 179 295 XP_041481762.1 60S ribosomal protein L5-like [Lytechinus variegatus] diamond 2703 72.8 0.994505494505495 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;