RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1195551", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1195551 · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6700396 6700396 PRJNA1195551_S_NODE_11286_length_282_cov_2.901288_g10933_i0 PRJNA1195551 11286 282 2.901288 8.18163216 Microvenator marinus 2600177 Bacteria Bacteria 315 3.0000000000000004e-81   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g10933 i0 88.76 185.663120567376 258 28 91 1 2 259 703524 703268 Microvenator marinus strain V1718 chromosome, complete genome blastn 52357 315 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus
27357084 27357084 PRJNA1195551_S_NODE_39923_length_163_cov_2.280702_g39570_i0 PRJNA1195551 39923 163 2.280702 3.71754426 Lujinxingia vulgaris 2600176 Bacteria Bacteria 41.2 0.0456   NR WP_146972715.1 2600176 g39570 i0 69.6 0.423312883435583 23 7 42.3 0 132 64 86 108 WP_146972715.1 PQQ-binding-like beta-propeller repeat protein [Lujinxingia vulgaris] diamond 69 41.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia vulgaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;