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contig_metadata

23 rows where bioproject = "PRJNA1195551" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 23 ✖

bioproject 1

  • PRJNA1195551 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5425785 5425785 PRJNA1195551_S_NODE_40665_length_162_cov_1.672566_g40312_i0 PRJNA1195551 40665 162 1.672566 2.70955692 Trebouxia asymmetrica 13787 Plants Plants 283 4.39e-72   NTclustered gi|189909382|gb|EU725860.1| 13787 g40312 i0 98.148 133.265432098765 162 3 100 0 1 162 1487 1326 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 21589 283 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
5425808 5425808 PRJNA1195551_S_NODE_8925_length_307_cov_2.472868_g8572_i0 PRJNA1195551 8925 307 2.472868 7.59170476 Volvox carteri 3067 Plants Plants 95.3 4.69e-15   NTclustered gi|302850129|ref|XM_002956547.1| 3068 g8572 i0 86.207 0.283387622149837 87 12 28 0 218 304 399 313 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl27A), mRNA blastn 87 95.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
6700469 6700469 PRJNA1195551_S_NODE_26846_length_195_cov_3.020548_g26493_i0 PRJNA1195551 26846 195 3.020548 5.8900686 Chloroidium ellipsoideum 63676 Plants Plants 305 1.17e-78   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g26493 i0 94.872 101.066666666667 195 10 100 0 1 195 3029 2835 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 19708 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
7975975 7975975 PRJNA1195551_S_NODE_8047_length_319_cov_4.200000_g7694_i0 PRJNA1195551 8047 319 4.2 13.398 Nannochloris normandinae 926285 Plants Plants 584 2.38e-162   NTclustered gi|922575245|gb|JQ921007.1| 926285 g7694 i0 99.687 123.520376175549 319 1 100 0 1 319 36 354 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 39403 584 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
10526379 10526379 PRJNA1195551_S_NODE_7849_length_322_cov_5.256410_g7496_i0 PRJNA1195551 7849 322 5.25641 16.9256402 Pseudochlorella signiensis 173497 Plants Plants 294 4.55e-75   NTclustered gi|725650714|ref|NC_025529.1| 173497 g7496 i0 94.271 61.4937888198758 192 11 60 0 131 322 150006 150197 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 19801 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
12521789 12521789 PRJNA1195551_S_NODE_8450_length_313_cov_7.893939_g8097_i0 PRJNA1195551 8450 313 7.893939 24.70802907 Eukaryota 2759 Plants Plants 139 2.18e-28   NTclustered gi|2082244743|ref|XM_001698671.2| 3055 g8097 i0 78.774 8.69009584664537 212 41 67 4 101 310 751 542 Chlamydomonas reinhardtii ribosomal protein L23 (CHLRE_04g211800v5), mRNA blastn 2720 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
14351614 14351614 PRJNA1195551_S_NODE_38312_length_166_cov_1.333333_g37959_i0 PRJNA1195551 38312 166 1.333333 2.21333278 Trebouxia aggregata 160068 Plants Plants 274 2.73e-69   NTclustered gi|162134245|gb|EU123948.1| 160068 g37959 i0 96.407 93.3734939759036 167 4 100 2 1 166 14873 15038 Trebouxia aggregata strain SAG 219-1d ribosomal protein S2 (rps2) gene, complete cds; tRNA-Met (trnMe(cau)) and large subunit ribosomal RNA (rnl) genes, complete sequence; putative site-specific DNA endonuclease (orf365) gene, complete cds; small subunit ribosomal RNA (rns) and tRNA-Met (trnMf(cau)) genes, complete sequence; cytochrome c oxidase subunit 1 (cox1), putative site-specific DNA endonuclease (orf335), and putative site-specific DNA endonuclease (orf256) genes, complete cds; tRNA-Phe (trnF(gaa)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; and apocytochrome b (cob) and putative site-specific DNA endonuclease (orf334) genes, complete cds; mitochondrial blastn 15500 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
16899690 16899690 PRJNA1195551_S_NODE_30054_length_185_cov_2.029412_g29701_i0 PRJNA1195551 30054 185 2.029412 3.7544122 Nannochloris normandinae 926285 Plants Plants 322 1.09e-83   NTclustered gi|922575245|gb|JQ921007.1| 926285 g29701 i0 100 106.210810810811 174 0 94 0 1 174 680 507 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 19649 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
16899717 16899717 PRJNA1195551_S_NODE_43074_length_156_cov_2.915888_g42721_i0 PRJNA1195551 43074 156 2.915888 4.54878528 Aegagropila linnaei 162062 Plants Plants 86.1 1.27e-12   NTclustered gi|1279575452|gb|MF683076.1| 162062 g42721 i0 93.103 0.724358974358974 58 4 37 0 98 155 3742 3685 Aegagropila linnaei 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 113 86.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Aegagropila Aegagropila linnaei
18894522 18894522 PRJNA1195551_S_NODE_23135_length_209_cov_5.343750_g22782_i0 PRJNA1195551 23135 209 5.34375 11.1684375 Chlorophyta 3041 Plants Plants 158 3.77e-34   NTclustered gi|1016470590|ref|NC_029807.1| 3190 g22782 i0 81.193 78.799043062201 218 22 99 15 1 208 93649 93441 Scherffelia dubia culture-collection SAG:17.86 plastid, complete genome blastn 16469 159 0.993710691823899 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
21999299 21999299 PRJNA1195551_S_NODE_15978_length_246_cov_5.274112_g15625_i0 PRJNA1195551 15978 246 5.274112 12.97431552 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082253788|ref|XM_043065912.1| 3055 g15625 i0 96.97 0.268292682926829 33 1 13 0 202 234 373 341 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g398900v5), mRNA blastn 66 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
21999329 21999329 PRJNA1195551_S_NODE_21158_length_218_cov_2.153846_g20805_i0 PRJNA1195551 21158 218 2.153846 4.69538428 Nannochloris normandinae 926285 Plants Plants 403 4.62e-108   NTclustered gi|922575245|gb|JQ921007.1| 926285 g20805 i0 100 122.220183486239 218 0 100 0 1 218 1507 1290 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 26644 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
27641325 27641325 PRJNA1195551_S_NODE_23684_length_207_cov_2.601266_g23331_i0 PRJNA1195551 23684 207 2.601266 5.38462062 Symbiochloris irregularis 706552 Plants Plants 41.2 0.048   NR KAK9812212.1 706552 g23331 i0 45.2 0.608695652173913 42 23 60.9 0 161 36 91 132 KAK9812212.1 hypothetical protein WJX73_004385 [Symbiochloris irregularis] diamond 126 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Symbiochloris Symbiochloris irregularis
27799166 27799166 PRJNA1195551_S_NODE_26664_length_196_cov_1.414966_g26311_i0 PRJNA1195551 26664 196 1.414966 2.77333336 Scenedesmus sp. PABB 2909984 Plants Plants 44.3 0.00563   NR KAF8057726.1 2742167 g26311 i0 56.8 0.566326530612245 37 14 53.6 1 174 70 257 293 KAF8057726.1 NAP1 [Scenedesmus sp. PABB004] diamond 111 44.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. PABB004
27893596 27893596 PRJNA1195551_S_NODE_36685_length_169_cov_0.866667_g36332_i0 PRJNA1195551 36685 169 0.866667 1.46466723 Coccomyxa viridis 1274662 Plants Plants 41.2 0.0482   NR CAL5222282.1 1274662 g36332 i0 70 0.355029585798817 20 6 35.5 0 3 62 4065 4084 CAL5222282.1 g4621 [Coccomyxa viridis] diamond 60 41.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
28177636 28177636 PRJNA1195551_S_NODE_9106_length_305_cov_2.843750_g8753_i0 PRJNA1195551 9106 305 2.84375 8.6734375 Monoraphidium neglectum 145388 Plants Plants 70.5 5.67e-12   NR XP_013900720.1 145388 g8753 i0 66 0.924590163934426 47 16 46.2 0 303 163 217 263 XP_013900720.1 PsbP domain-containing protein 6 [Monoraphidium neglectum] diamond 282 70.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
29018090 29018090 PRJNA1195551_S_NODE_29788_length_186_cov_1.138686_g29435_i0 PRJNA1195551 29788 186 1.138686 2.11795596 Coccomyxa 41891 Plants Plants 54.7 1.17e-7   NR CAL8469249.1 1965095 g29435 i0 56.3 1.54838709677419 48 21 77.4 0 185 42 61 108 CAL8469249.1 g8790 [Coccomyxa elongata] diamond 288 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
29175815 29175815 PRJNA1195551_S_NODE_12069_length_275_cov_3.681416_g11716_i0 PRJNA1195551 12069 275 3.681416 10.123894 Chlorellaceae 35461 Plants Plants 91.3 4.06e-19   NR PRW57126.1 3076 g11716 i0 85.4 5.71636363636364 48 7 52.4 0 273 130 441 488 PRW57126.1 Photosystem II 10 kDa chloroplastic [Chlorella sorokiniana] diamond 1572 91.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
30514774 30514774 PRJNA1195551_S_NODE_19953_length_224_cov_1.188571_g19600_i0 PRJNA1195551 19953 224 1.188571 2.66239904 Micractinium tetrahymenae 2728915 Plants Plants 74.3 2.1e-13   NR KAL4458929.1 2728915 g19600 i0 50 0.883928571428571 66 33 88.4 0 224 27 423 488 KAL4458929.1 hypothetical protein ABPG75_013794 [Micractinium tetrahymenae] diamond 198 74.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium tetrahymenae
30672634 30672634 PRJNA1195551_S_NODE_27153_length_194_cov_2.593103_g26800_i0 PRJNA1195551 27153 194 2.593103 5.03061982 Astrephomene gubernaculifera 47775 Plants Plants 47.4 2.61e-4   NR GFR53048.1 47775 g26800 i0 71.4 0.43298969072165 28 8 43.3 0 179 96 150 177 GFR53048.1 hypothetical protein Agub_g15749 [Astrephomene gubernaculifera] diamond 84 47.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
31178015 31178015 PRJNA1195551_S_NODE_22795_length_211_cov_1.604938_g22442_i0 PRJNA1195551 22795 211 1.604938 3.38641918 [Myrmecia] bisecta 41462 Plants Plants 85.9 3.69e-19   NR KAK9815510.1 41462 g22442 i0 70.2 0.81042654028436 57 17 81 0 1 171 107 163 KAK9815510.1 hypothetical protein WJX72_004886 [[Myrmecia] bisecta] diamond 171 85.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
31779107 31779107 PRJNA1195551_S_NODE_16337_length_244_cov_2.400000_g15984_i0 PRJNA1195551 16337 244 2.4 5.856 Pedinophyceae sp. YPF-7 765719 Plants Plants 55.8 2.12e-7   NR CAG9461740.1 765719 g15984 i0 60.4 1.79508196721311 48 19 59 0 242 99 106 153 CAG9461740.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 438 55.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
31893052 31893052 PRJNA1195551_S_NODE_7537_length_327_cov_3.348921_g7184_i0 PRJNA1195551 7537 327 3.348921 10.95097167 Volvocaceae 3065 Plants Plants 42 0.0343   NR KXZ52926.1 33097 g7184 i0 46.2 1.28440366972477 65 28 55 4 327 148 24 86 KXZ52926.1 hypothetical protein GPECTOR_8g302 [Gonium pectorale] diamond 420 42 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;