RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1195551", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1195551 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15625369 15625369 PRJNA1195551_S_NODE_29373_length_187_cov_1.702899_g29020_i0 PRJNA1195551 29373 187 1.702899 3.18442113 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 263 6.79e-66   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g29020 i0 91.979 51.1604278074866 187 15 100 0 1 187 213 27 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 9567 263 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
17620873 17620873 PRJNA1195551_S_NODE_32634_length_178_cov_1.581395_g32281_i0 PRJNA1195551 32634 178 1.581395 2.8148831 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 329 6.21e-86   NTclustered gi|2065561668|gb|MZ540265.1| 44029 g32281 i0 100 100 178 0 100 0 1 178 893 716 Paramecium jenningsi isolate UR02 small subunit ribosomal RNA gene, partial sequence blastn 17800 329 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium jenningsi
19448638 19448638 PRJNA1195551_S_NODE_31916_length_180_cov_0.969466_g31563_i0 PRJNA1195551 31916 180 0.969466 1.7450388 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.015   NTclustered gi|145528242|ref|XM_001449884.1| 5888 g31563 i0 100 0.155555555555556 28 0 16 0 135 162 274 301 Paramecium tetraurelia uncharacterized protein (GSPATT00016911001), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
30262295 30262295 PRJNA1195551_S_NODE_37812_length_167_cov_0.881356_g37459_i0 PRJNA1195551 37812 167 0.881356 1.47186452 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 56.6 1.66e-7   NR XP_001016313.1 312017 g37459 i0 42.9 1.0059880239521 56 31 98.8 1 166 2 316 371 XP_001016313.1 eukaryotic aspartyl protease [Tetrahymena thermophila SB210] diamond 168 56.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;