RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1195551", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1195551 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28746203 28746203 PRJNA1195551_S_NODE_31487_length_181_cov_1.575758_g31134_i0 PRJNA1195551 31487 181 1.575758 2.85212198 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 41.6 0.0426   NR MBI3416934.1 2026799 g31134 i0 48.8 0.679558011049724 41 16 68 1 177 55 483 518 MBI3416934.1 2-isopropylmalate synthase [Verrucomicrobiota bacterium] diamond 123 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31937276 31937276 PRJNA1195551_S_NODE_34317_length_174_cov_1.248000_g33964_i0 PRJNA1195551 34317 174 1.248 2.17152 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.028   NR MBU4366548.1 2026799 g33964 i0 32.2 1.01724137931034 59 35 94.8 2 171 7 202 259 MBU4366548.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 177 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32443945 32443945 PRJNA1195551_S_NODE_21379_length_217_cov_2.464286_g21026_i0 PRJNA1195551 21379 217 2.464286 5.34750062 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0348   NR MEP7015433.1 2026799 g21026 i0 42.6 0.649769585253456 47 25 62.2 1 6 140 120 166 MEP7015433.1 acyl-CoA dehydrogenase family protein [Verrucomicrobiota bacterium] diamond 141 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;