RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1195551", tax_clade = "PVC group" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1195551 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9250495 9250495 PRJNA1195551_S_NODE_31488_length_181_cov_1.575758_g31135_i0 PRJNA1195551 31488 181 1.575758 2.85212198 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 246 6.57e-61   NTclustered gi|2874253749|emb|OY969623.1| 1914239 g31135 i0 91.667 172.950276243094 180 12 98 3 5 181 7052353 7052174 MAG: uncultured Gemmataceae bacterium isolate MFD06742.bin.c.1 genome assembly, chromosome: 1 blastn 31304 246 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
26851164 26851164 PRJNA1195551_S_NODE_20121_length_223_cov_2.120690_g19768_i0 PRJNA1195551 20121 223 2.12069 4.7291387 Planctomycetota bacterium 2026780 Bacteria Bacteria 42.4 0.0398   NR MBM4027505.1 2026780 g19768 i0 44.3 0.820627802690583 61 28 82.1 2 37 219 29 83 MBM4027505.1 LamG domain-containing protein [Planctomycetota bacterium] diamond 183 42.4 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28051558 28051558 PRJNA1195551_S_NODE_29005_length_188_cov_2.366906_g28652_i0 PRJNA1195551 29005 188 2.366906 4.44978328 Planctomycetota bacterium 2026780 Bacteria Bacteria 43.5 0.00935   NR MBI4554663.1 2026780 g28652 i0 43.2 1.77127659574468 37 21 59 0 120 10 184 220 MBI4554663.1 cytochrome C [Planctomycetota bacterium] diamond 333 43.5 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31747504 31747504 PRJNA1195551_S_NODE_20117_length_223_cov_2.298851_g19764_i0 PRJNA1195551 20117 223 2.298851 5.12643773 Planctomycetota bacterium 2026780 Bacteria Bacteria 42 0.0466   NR HVG94163.1 2026780 g19764 i0 37.5 0.645739910313901 48 30 64.6 0 49 192 68 115 HVG94163.1 phosphatase PAP2 family protein [Planctomycetota bacterium] diamond 144 42 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;