RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1195551", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1195551 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12521771 12521771 PRJNA1195551_S_NODE_4510_length_402_cov_8.660057_g4157_i0 PRJNA1195551 4510 402 8.660057 34.81342914 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 128 7.840000000000001e-33   NR XP_009164805.1 6198 g4157 i0 73.3 8.94776119402985 75 20 56 0 2 226 267 341 XP_009164805.1 hypothetical protein T265_02327 [Opisthorchis viverrini] diamond 3597 128 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
20723954 20723954 PRJNA1195551_S_NODE_3077_length_480_cov_5.081206_g2727_i0 PRJNA1195551 3077 480 5.081206 24.3897888 Diplorchis hangzhouensis 1131906 Platyhelminthes Platyhelminthes 54.7 0.013   NTclustered gi|379771686|gb|JQ038227.1| 1131906 g2727 i0 100 0.0604166666666667 29 0 6 0 112 140 5361 5389 Diplorchis hangzhouensis mitochondrion sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Polystomatidea Polystomatidae Diplorchis Diplorchis hangzhouensis
28556925 28556925 PRJNA1195551_S_NODE_40987_length_161_cov_6.803571_g40634_i0 PRJNA1195551 40987 161 6.803571 10.95374931 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 73.9 4.03e-15   NR AAW27122.1 6182 g40634 i0 82.2 0.838509316770186 45 6 80.1 1 159 31 5 49 AAW27122.1 SJCHGC01951 protein [Schistosoma japonicum] diamond 135 73.9 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;