RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1195551", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1195551 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28493721 28493721 PRJNA1195551_S_NODE_38407_length_166_cov_0.888889_g38054_i0 PRJNA1195551 38407 166 0.888889 1.47555574 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 76.6 1.16e-14   NR KAH9260099.1 1357716 g38054 i0 66 3.83132530120482 53 18 95.8 0 159 1 301 353 KAH9260099.1 3-deoxy-7-phosphoheptulonate synthase [Batrachochytrium salamandrivorans] diamond 636 76.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
29440543 29440543 PRJNA1195551_S_NODE_31510_length_181_cov_1.181818_g31157_i0 PRJNA1195551 31510 181 1.181818 2.13909058 Gonapodya prolifera JEL478 1344416 Fungi Fungi 42.7 0.0169   NR KXS11350.1 1344416 g31157 i0 47.7 0.729281767955801 44 23 72.9 0 174 43 368 411 KXS11350.1 hypothetical protein M427DRAFT_35890 [Gonapodya prolifera JEL478] diamond 132 42.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Gonapodyaceae Gonapodya Gonapodya prolifera
31874075 31874075 PRJNA1195551_S_NODE_2797_length_500_cov_16.053215_g2451_i0 PRJNA1195551 2797 500 16.053215 80.266075 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 132 3.16e-34   NR KAH9254230.1 1357716 g2451 i0 62.1 0.696 116 40 69 3 1 345 214 326 KAH9254230.1 hypothetical protein BASA81_007831 [Batrachochytrium salamandrivorans] diamond 348 132 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;