RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1195551", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1195551 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2873360 2873360 PRJNA1195551_S_NODE_19843_length_224_cov_6.017143_g19490_i0 PRJNA1195551 19843 224 6.017143 13.47840032 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 320 4.94e-83   NTclustered gi|2874253978|emb|OY970303.1| 412054 g19490 i0 92.478 774.508928571429 226 13 100 3 1 224 1904226 1904003 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 173490 320 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
2873429 2873429 PRJNA1195551_S_NODE_9903_length_296_cov_4.805668_g9550_i0 PRJNA1195551 9903 296 4.805668 14.22477728 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 303 6.87e-78   NTclustered gi|2874253789|emb|OY969773.1| 412054 g9550 i0 91.556 57.152027027027 225 11 75 7 71 291 418872 419092 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 16917 303 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5425760 5425760 PRJNA1195551_S_NODE_33065_length_177_cov_1.218750_g32712_i0 PRJNA1195551 33065 177 1.21875 2.1571875 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 250 4.94e-62   NTclustered gi|2874253978|emb|OY970303.1| 412054 g32712 i0 92.09 73.7853107344633 177 14 100 0 1 177 1903491 1903315 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 13060 250 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
6700391 6700391 PRJNA1195551_S_NODE_10786_length_287_cov_2.369748_g10433_i0 PRJNA1195551 10786 287 2.369748 6.80117676 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 425 1.36e-114   NTclustered gi|2874253728|emb|OY969570.1| 412054 g10433 i0 93.38 180.19512195122 287 19 100 0 1 287 172412 172126 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 51716 425 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20723921 20723921 PRJNA1195551_S_NODE_18357_length_232_cov_3.076503_g18004_i0 PRJNA1195551 18357 232 3.076503 7.13748696 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 303 5.19e-78   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18004 i0 90.558 243.090517241379 233 16 100 5 4 232 172648 172418 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 56397 303 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
30294025 30294025 PRJNA1195551_S_NODE_32152_length_179_cov_2.753846_g31799_i0 PRJNA1195551 32152 179 2.753846 4.92938434 Longimicrobiales bacterium 2910168 Bacteria Bacteria 42.7 0.016   NR MDX1566374.1 2910168 g31799 i0 50 0.569832402234637 34 17 57 0 10 111 656 689 MDX1566374.1 oligopeptide transporter, OPT family [Longimicrobiales bacterium] diamond 102 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;