RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1195551", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA1195551 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23995217 23995217 PRJNA1195551_S_NODE_32139_length_179_cov_2.800000_g31786_i0 PRJNA1195551 32139 179 2.8 5.012 Naegleria 5761 Heterolobosea other_Eukaryota 331 1.74e-86   NTclustered gi|2618963742|gb|OR769034.1| 5762 g31786 i0 100 9.2122905027933 179 0 100 0 1 179 5665 5487 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1649 331 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28354655 28354655 PRJNA1195551_S_NODE_29326_length_187_cov_2.260870_g28973_i0 PRJNA1195551 29326 187 2.26087 4.2278269 root 1 Root_unresolved Root_unresolved 52 5.29e-6   NR XP_044569473.1 5763 g28973 i0 47.8 10.620320855615 46 24 73.8 0 32 169 151 196 XP_044569473.1 uncharacterized protein FDP41_000659 [Naegleria fowleri] diamond 1986 52.4 0.99236641221374 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
30167084 30167084 PRJNA1195551_S_NODE_5932_length_358_cov_3.724919_g5579_i0 PRJNA1195551 5932 358 3.724919 13.33521002 Acrasis kona 1008807 Heterolobosea other_Eukaryota 74.3 6.63e-13   NR KAL0489712.1 1008807 g5579 i0 63 0.905027932960894 54 19 45.3 1 2 163 261 313 KAL0489712.1 heterotrimeric G-protein beta subunit [Acrasis kona] diamond 324 74.3 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;