RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1195374", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1195374 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4148764 4148764 PRJNA1195374_P_NODE_53924_length_297_cov_1.031250_g53580_i0 PRJNA1195374 53924 297 1.03125 3.0628125 Capillovirus mali 28347 Viruses Viruses 422 1.83e-113   NTclustered gi|1249614036|dbj|LC184612.1| 28347 g53580 i0 93.333 37.7575757575758 285 19 96 0 13 297 3744 3460 Apple stem grooving virus genomic RNA, complete genome, isolate: Nagami blastn 11214 422 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
24548306 24548306 PRJNA1195374_P_NODE_70960_length_251_cov_0.865169_g70616_i0 PRJNA1195374 70960 251 0.865169 2.17157419 Capillovirus mali 28347 Viruses Viruses 420 5.41e-113   NTclustered gi|2700566162|gb|ON820668.1| 33759 g70616 i0 96.813 99.6494023904382 251 8 100 0 1 251 5625 5875 Citrus tatter leaf virus isolate SC-BJNM, complete genome blastn 25012 420 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
24548311 24548311 PRJNA1195374_P_NODE_71080_length_251_cov_0.865169_g70736_i0 PRJNA1195374 71080 251 0.865169 2.17157419 Capillovirus mali 28347 Viruses Viruses 442 1.1599999999999995e-119   NTclustered gi|525333947|gb|JX885576.1| 28347 g70736 i0 98.406 100 251 4 100 0 1 251 85 335 Apple stem grooving virus isolate MH coat protein gene, complete cds blastn 25100 442 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;