RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1195374" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1195374 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7975086 7975086 PRJNA1195374_P_NODE_48707_length_316_cov_1.226337_g48363_i0 PRJNA1195374 48707 316 1.226337 3.87522492 Bacteria 2 Bacteria Bacteria 129 3.95e-35   NR ARU43032.1 2004468 g48363 i0 65.3 1.80379746835443 95 33 90.2 0 316 32 123 217 ARU43032.1 succinyl-CoA--3-ketoacid-CoA transferase [Armatimonadetes bacterium Uphvl-Ar2] diamond 570 129 1 Bacteria   Bacillati Armatimonadota         Armatimonadetes bacterium Uphvl-Ar2
27167029 27167029 PRJNA1195374_P_NODE_1382_length_1438_cov_1.589011_g1249_i0 PRJNA1195374 1382 1438 1.589011 22.84997818 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 247 1.12e-67   NR MCW3101490.1 2739509 g1249 i0 41.2 0.698887343532684 335 187 69.5 6 1436 438 1266 1592 MCW3101490.1 retrovirus-related Pol polyprotein from transposon 1-94 [Chthonomonadaceae bacterium] diamond 1005 247 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
27799132 27799132 PRJNA1195374_P_NODE_4944_length_934_cov_2.845528_g4685_i0 PRJNA1195374 4944 934 2.845528 26.57723152 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 99.4 3.8600000000000003e-22   NR MBC7526332.1 2739509 g4685 i0 52.1 0.607066381156317 94 44 29.9 1 45 323 2 95 MBC7526332.1 Dabb family protein [Chthonomonadaceae bacterium] diamond 567 99.4 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium
29112565 29112565 PRJNA1195374_P_NODE_18308_length_529_cov_3.743421_g17965_i0 PRJNA1195374 18308 529 3.743421 19.80269709 Bacillati 1783272 Bacteria Bacteria 149 3.28e-39   NR MBM3464694.1 2033014 g17965 i0 61.3 8.68809073724008 119 46 67.5 0 1 357 330 448 MBM3464694.1 aspartate aminotransferase family protein [Armatimonadota bacterium] diamond 4596 149 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29175810 29175810 PRJNA1195374_P_NODE_77109_length_247_cov_0.885057_g76765_i0 PRJNA1195374 77109 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 107 5.64e-25   NR MDH7569777.1 2033014 g76765 i0 67.1 2.84210526315789 76 24 91.1 1 240 16 475 550 MDH7569777.1 CocE/NonD family hydrolase [Armatimonadota bacterium] diamond 702 108 0.990740740740741 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
29756378 29756378 PRJNA1195374_P_NODE_19231_length_517_cov_1.720721_g18888_i0 PRJNA1195374 19231 517 1.720721 8.89612757 Armatimonas rosea 685828 Bacteria Bacteria 82.8 1.41e-15   NR WP_184192530.1 685828 g18888 i0 41 1.71179883945841 161 66 92.3 5 500 24 112 245 WP_184192530.1 ADP-ribosylglycohydrolase family protein [Armatimonas rosea] diamond 885 82.8 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae Armatimonas Armatimonas rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;