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contig_metadata

28 rows where bioproject = "PRJNA1195374", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 28 ✖

tax_kingdom 1

  • Pseudomonadati · 28 ✖

bioproject 1

  • PRJNA1195374 · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8695727 8695727 PRJNA1195374_P_NODE_44527_length_332_cov_2.081081_g44183_i0 PRJNA1195374 44527 332 2.081081 6.90918892 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 189 4.89e-59   NR MCB0370127.1 2053517 g44183 i0 89.9 7.87951807228916 109 10 98.5 1 3 329 63 170 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 2616 189 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
11245834 11245834 PRJNA1195374_P_NODE_18089_length_533_cov_1.084783_g17746_i0 PRJNA1195374 18089 533 1.084783 5.78189339 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 878 0   NTclustered gi|2800948966|gb|CP168973.1| 959 g17746 i0 96.435 193.367729831144 533 18 100 1 1 533 1676951 1677482 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 103065 883 0.994337485843715 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16345038 16345038 PRJNA1195374_P_NODE_12413_length_635_cov_2.425267_g12078_i0 PRJNA1195374 12413 635 2.425267 15.40044545 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 977 0   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g12078 i0 94.366 174.862992125984 639 32 100 3 1 635 666362 667000 Bdellovibrio sp. qaytius chromosome, complete genome blastn 111038 977 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
18173305 18173305 PRJNA1195374_P_NODE_45115_length_330_cov_1.182879_g44771_i0 PRJNA1195374 45115 330 1.182879 3.9035007 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 172 9.65e-50   NR WP_331339159.1 28201 g44771 i0 75.5 21.6363636363636 110 27 100 0 1 330 269 378 WP_331339159.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 7140 172 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
18173320 18173320 PRJNA1195374_P_NODE_45675_length_327_cov_2.673228_g45331_i0 PRJNA1195374 45675 327 2.673228 8.74145556 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 164 2.46e-49   NR MCB0370127.1 2053517 g45331 i0 88.7 8.00917431192661 97 10 89 1 36 326 72 167 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 2619 164 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
22719644 22719644 PRJNA1195374_P_NODE_53718_length_297_cov_2.504464_g53374_i0 PRJNA1195374 53718 297 2.504464 7.43825808 Bdellovibrio 958 Bacteria Bacteria 176 1.57e-39   NTclustered gi|2800924434|gb|CP168967.1| 959 g53374 i0 82.326 2.17171717171717 215 27 72 10 78 290 1022150 1022355 Bdellovibrio bacteriovorus strain Bd4 chromosome, complete genome blastn 645 176 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
24547783 24547783 PRJNA1195374_P_NODE_44760_length_331_cov_1.635659_g44416_i0 PRJNA1195374 44760 331 1.635659 5.41403129 Peredibacter starrii 28202 Bacteria Bacteria 525 1.53e-144   NTclustered gi|2631252187|gb|CP139487.1| 28202 g44416 i0 95.441 59.4803625377643 329 15 99 0 3 331 512054 512382 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 19688 525 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
26882747 26882747 PRJNA1195374_P_NODE_58981_length_282_cov_1.669856_g58637_i0 PRJNA1195374 58981 282 1.669856 4.70899392 Bdellovibrio sp. 28201 Bacteria Bacteria 58.2 3.51e-8   NR MBC7420391.1 28201 g58637 i0 40 0.531914893617021 50 30 53.2 0 277 128 93 142 MBC7420391.1 MAPEG family protein [Bdellovibrio sp.] diamond 150 58.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
27009039 27009039 PRJNA1195374_P_NODE_76862_length_247_cov_0.885057_g76518_i0 PRJNA1195374 76862 247 0.885057 2.18609079 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 139 5.45e-37   NR MFN3698126.1 2862747 g76518 i0 85 0.97165991902834 80 12 97.2 0 244 5 415 494 MFN3698126.1 chemotaxis protein CheW [Pseudobdellovibrio sp.] diamond 240 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
28039072 28039072 PRJNA1195374_P_NODE_81265_length_244_cov_0.900585_g80921_i0 PRJNA1195374 81265 244 0.900585 2.1974274 Bdellovibrio 958 Bacteria Bacteria 115 3.74e-29   NR MBC7466875.1 28201 g80921 i0 66.7 1.97950819672131 81 27 99.6 0 243 1 48 128 MBC7466875.1 GGDEF domain-containing protein [Bdellovibrio sp.] diamond 483 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28083062 28083062 PRJNA1195374_P_NODE_69625_length_254_cov_1.276243_g69281_i0 PRJNA1195374 69625 254 1.276243 3.24165722 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 57.4 2.87e-7   NR HUP56122.1 3034175 g69281 i0 48.6 0.850393700787402 72 33 85 2 251 36 83 150 HUP56122.1 TolC family protein [Bdellovibrionota bacterium] diamond 216 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28177623 28177623 PRJNA1195374_P_NODE_80866_length_244_cov_0.900585_g80522_i0 PRJNA1195374 80866 244 0.900585 2.1974274 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 57.8 1.84e-7   NR MFN8790749.1 2053517 g80522 i0 41.3 0.922131147540984 75 41 88.5 2 221 6 536 610 MFN8790749.1 hypothetical protein [Bdellovibrionales bacterium] diamond 225 57.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28304079 28304079 PRJNA1195374_P_NODE_1286_length_1468_cov_2.609319_g1161_i0 PRJNA1195374 1286 1468 2.609319 38.30480292 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 77.4 2.16e-11   NR MFN8790750.1 2053517 g1161 i0 37.5 0.245231607629428 120 70 24.3 3 1433 1077 208 323 MFN8790750.1 site-specific integrase [Bdellovibrionales bacterium] diamond 360 77.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28493686 28493686 PRJNA1195374_P_NODE_60487_length_278_cov_1.804878_g60143_i0 PRJNA1195374 60487 278 1.804878 5.01756084 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 112 1.02e-27   NR MCB0369784.1 2053517 g60143 i0 65 0.863309352517986 80 28 86.3 0 243 4 183 262 MCB0369784.1 insulinase family protein [Bdellovibrionales bacterium] diamond 240 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29535529 29535529 PRJNA1195374_P_NODE_58970_length_282_cov_1.813397_g58626_i0 PRJNA1195374 58970 282 1.813397 5.11377954 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 111 1.51e-26   NR MCB0336345.1 2053517 g58626 i0 54.4 1.8936170212766 90 39 95.7 1 273 4 322 409 MCB0336345.1 hypothetical protein [Bdellovibrionales bacterium] diamond 534 111 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29629853 29629853 PRJNA1195374_P_NODE_22150_length_482_cov_2.303178_g21806_i0 PRJNA1195374 22150 482 2.303178 11.10131796 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 45.1 0.0463   NR MBC61350.1 2026715 g21806 i0 40.2 0.510373443983402 82 37 43.6 3 131 340 99 180 MBC61350.1 CDP-diacylglycerol--serine O-phosphatidyltransferase [Pseudobdellovibrionaceae bacterium] diamond 246 45.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29693023 29693023 PRJNA1195374_P_NODE_16150_length_563_cov_1.720408_g15809_i0 PRJNA1195374 16150 563 1.720408 9.68589704 Bacteriovorax sp. DB6_IX 1353530 Bacteria Bacteria 107 4.94e-26   NR WP_021278338.1 1353530 g15809 i0 44.8 2.81882770870337 134 57 71.4 3 6 407 38 154 WP_021278338.1 GAF domain-containing protein [Bacteriovorax sp. DB6_IX] diamond 1587 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. DB6_IX
29977592 29977592 PRJNA1195374_P_NODE_71791_length_251_cov_0.865169_g71447_i0 PRJNA1195374 71791 251 0.865169 2.17157419 Bdellovibrio sp. NC 28201 Bacteria Bacteria 56.2 1.39e-7   NR WP_142697642.1 2220073 g71447 i0 69.4 0.430278884462151 36 11 43 0 129 236 2 37 WP_142697642.1 TIGR02530 family flagellar biosynthesis protein [Bdellovibrio sp. NC01] diamond 108 56.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. NC01
30040850 30040850 PRJNA1195374_P_NODE_74151_length_249_cov_0.875000_g73807_i0 PRJNA1195374 74151 249 0.875 2.17875 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.8 0.00319   NR MCB0339571.1 2053517 g73807 i0 31.3 5.2289156626506 64 43 75.9 1 59 247 366 429 MCB0339571.1 hypothetical protein [Bdellovibrionales bacterium] diamond 1302 45.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30293978 30293978 PRJNA1195374_P_NODE_46752_length_323_cov_1.492000_g46408_i0 PRJNA1195374 46752 323 1.492 4.81916 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 80.1 1.51e-16   NR MFN3697587.1 2862747 g46408 i0 55.9 0.631578947368421 68 30 63.2 0 210 7 30 97 MFN3697587.1 Hsp20/alpha crystallin family protein [Pseudobdellovibrio sp.] diamond 204 80.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
30325752 30325752 PRJNA1195374_P_NODE_79932_length_245_cov_0.895349_g79588_i0 PRJNA1195374 79932 245 0.895349 2.19360505 Halobacteriovoraceae bacterium 2026745 Bacteria Bacteria 72.8 1e-12   NR MCB9060932.1 2026745 g79588 i0 46.3 2.98775510204082 82 41 99.2 2 243 1 559 638 MCB9060932.1 BspA family leucine-rich repeat surface protein [Halobacteriovoraceae bacterium] diamond 732 72.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae   Halobacteriovoraceae bacterium
30514734 30514734 PRJNA1195374_P_NODE_40513_length_351_cov_0.726619_g40169_i0 PRJNA1195374 40513 351 0.726619 2.55043269 Micavibrio sp. 2024841 Bacteria Bacteria 114 1.7600000000000003e-27   NR MFA5591951.1 2024841 g40169 i0 55.4 1.76923076923077 101 45 86.3 0 48 350 2 102 MFA5591951.1 acyl-CoA dehydrogenase [Micavibrio sp.] diamond 621 114 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
30798956 30798956 PRJNA1195374_P_NODE_24014_length_463_cov_1.992308_g23670_i0 PRJNA1195374 24014 463 1.992308 9.22438604 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 167 1.29e-49   NR MCB0370127.1 2053517 g23670 i0 88.8 0.634989200863931 98 9 62.2 1 289 2 72 169 MCB0370127.1 40S ribosomal protein S14 [Bdellovibrionales bacterium] diamond 294 167 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30894077 30894077 PRJNA1195374_P_NODE_57954_length_285_cov_1.287736_g57610_i0 PRJNA1195374 57954 285 1.287736 3.6700476 Bdellovibrio sp. 28201 Bacteria Bacteria 65.9 1.86e-10   NR WP_331337745.1 28201 g57610 i0 46.3 1.36842105263158 67 36 70.5 0 3 203 175 241 WP_331337745.1 HEAT repeat domain-containing protein [Bdellovibrio sp.] diamond 390 65.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31146256 31146256 PRJNA1195374_P_NODE_74275_length_249_cov_0.875000_g73931_i0 PRJNA1195374 74275 249 0.875 2.17875 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 124 3.19e-31   NR MBU6376802.1 2053517 g73931 i0 72 14.8192771084337 82 23 98.8 0 247 2 364 445 MBU6376802.1 L-glutamate gamma-semialdehyde dehydrogenase [Bdellovibrionales bacterium] diamond 3690 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31956250 31956250 PRJNA1195374_P_NODE_68477_length_257_cov_1.304348_g68133_i0 PRJNA1195374 68477 257 1.304348 3.35217436 root 1 Root_unresolved Root_unresolved 42.7 0.0354   NR MBT3235718.1 2053517 g68133 i0 36.1 1.96108949416342 83 42 96.9 3 250 2 59 130 MBT3235718.1 thiopurine S-methyltransferase [Bdellovibrionales bacterium] diamond 504 42.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32727632 32727632 PRJNA1195374_P_NODE_13240_length_617_cov_1.597426_g12903_i0 PRJNA1195374 13240 617 1.597426 9.85611842 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 205 2.19e-63   NR MBX9767865.1 2053517 g12903 i0 54.2 0.860615883306321 177 81 86.1 0 617 87 25 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 531 205 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32853474 32853474 PRJNA1195374_P_NODE_69020_length_255_cov_2.538462_g68676_i0 PRJNA1195374 69020 255 2.538462 6.4730781 Oligoflexia bacterium 2599941 Bacteria Bacteria 99.4 1e-23   NR MCO5142558.1 2599941 g68676 i0 55 2.87058823529412 80 36 94.1 0 254 15 115 194 MCO5142558.1 FMN-binding negative transcriptional regulator [Oligoflexia bacterium] diamond 732 99.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;