RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1195374", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA1195374 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26819444 26819444 PRJNA1195374_P_NODE_65421_length_265_cov_1.583333_g65077_i0 PRJNA1195374 65421 265 1.583333 4.19583245 Candidatus Methanoplasma termitum 1577791 Archaea Archaea 60.8 1.77e-8   NR WP_048112063.1 1577791 g65077 i0 49.3 0.80377358490566 71 32 77 2 260 57 172 241 WP_048112063.1 pirin family protein [Candidatus Methanoplasma termitum] diamond 213 60.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Candidatus Methanoplasma Candidatus Methanoplasma termitum
30925736 30925736 PRJNA1195374_P_NODE_58614_length_283_cov_1.466667_g58270_i0 PRJNA1195374 58614 283 1.466667 4.15066761 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 45.4 8.64e-4   NR HKM13850.1 2517205 g58270 i0 47.8 1.46289752650177 46 22 48.8 1 1 138 38 81 HKM13850.1 LSM domain-containing protein [Candidatus Methanomethylophilaceae archaeon] diamond 414 45.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
31810805 31810805 PRJNA1195374_P_NODE_11177_length_666_cov_2.507589_g10851_i0 PRJNA1195374 11177 666 2.507589 16.70054274 Thermoplasmatota archaeon 2806419 Archaea Archaea 56.2 4.97e-6   NR MCL4334626.1 2806419 g10851 i0 33.6 0.509009009009009 113 65 46.4 4 329 637 5 117 MCL4334626.1 single-stranded DNA-binding protein [Thermoplasmatota archaeon] diamond 339 56.2 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;