RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1195374", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1195374 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14350344 14350344 PRJNA1195374_P_NODE_25332_length_450_cov_2.450928_g24988_i0 PRJNA1195374 25332 450 2.450928 11.029176 uncultured delta proteobacterium 34034 Bacteria Bacteria 141 9.04e-29   NTclustered gi|2874253659|emb|OY969087.1| 34034 g24988 i0 84.247 4.71777777777778 146 22 32 1 285 430 1476470 1476326 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 2123 141 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27262192 27262192 PRJNA1195374_P_NODE_64883_length_267_cov_1.154639_g64539_i0 PRJNA1195374 64883 267 1.154639 3.08288613 SAR324 cluster bacterium 2024889 Bacteria Bacteria 61.6 2.81e-9   NR MEC8223348.1 2024889 g64539 i0 45.2 1.64044943820225 73 37 78.7 1 43 252 90 162 MEC8223348.1 glutathione S-transferase family protein [SAR324 cluster bacterium] diamond 438 61.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29251146 29251146 PRJNA1195374_P_NODE_30669_length_408_cov_1.817910_g30325_i0 PRJNA1195374 30669 408 1.81791 7.4170728 SAR324 cluster bacterium 2024889 Bacteria Bacteria 124 1.25e-30   NR MBF0276877.1 2024889 g30325 i0 47.8 2.97794117647059 136 70 99.3 1 2 406 147 282 MBF0276877.1 M20/M25/M40 family metallo-hydrolase [SAR324 cluster bacterium] diamond 1215 124 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30230331 30230331 PRJNA1195374_P_NODE_22692_length_477_cov_1.210396_g22348_i0 PRJNA1195374 22692 477 1.210396 5.77358892 Microvenator marinus 2600177 Bacteria Bacteria 55.5 1.44e-5   NR WP_146962556.1 2600177 g22348 i0 56.3 0.30188679245283 48 19 30.2 1 250 107 356 401 WP_146962556.1 hypothetical protein [Microvenator marinus] diamond 144 55.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;