RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1195374", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1195374 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19448397 19448397 PRJNA1195374_P_NODE_7956_length_772_cov_2.240343_g7648_i0 PRJNA1195374 7956 772 2.240343 17.29544796 PVC group 1783257 Bacteria Bacteria 145 8.48e-36   NR MBI3999073.1 2035772 g7648 i0 58.8 7.25518134715026 114 45 44.3 1 12 353 496 607 MBI3999073.1 phosphoenolpyruvate carboxykinase (GTP) [Candidatus Omnitrophota bacterium] diamond 5601 146 0.993150684931507 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27641296 27641296 PRJNA1195374_P_NODE_61884_length_275_cov_1.143564_g61540_i0 PRJNA1195374 61884 275 1.143564 3.144801 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 44.3 0.0156   NR MBI4343006.1 2035772 g61540 i0 39.7 0.741818181818182 68 40 74.2 1 30 233 422 488 MBI4343006.1 asparagine synthase (glutamine-hydrolyzing) [Candidatus Omnitrophota bacterium] diamond 204 44.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29207355 29207355 PRJNA1195374_P_NODE_13769_length_606_cov_1.716698_g13431_i0 PRJNA1195374 13769 606 1.716698 10.40318988 Bacteria 2 Bacteria Bacteria 89 1.08e-16   NR OGX24346.1 1801846 g13431 i0 42.3 1.21782178217822 123 63 58.9 2 61 417 325 443 OGX24346.1 MAG: hypothetical protein A2Y03_03730 [Omnitrophica WOR_2 bacterium GWF2_38_59] diamond 738 89 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium GWF2_38_59
32620534 32620534 PRJNA1195374_P_NODE_67640_length_259_cov_1.655914_g67296_i0 PRJNA1195374 67640 259 1.655914 4.28881726 Bacteria 2 Bacteria Bacteria 67.4 3.06e-12   NR MDD4202097.1 2035772 g67296 i0 62 3.47490347490348 50 19 57.9 0 251 102 33 82 MDD4202097.1 30S ribosomal protein S10 [Candidatus Omnitrophota bacterium] diamond 900 67.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;