RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1195374", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1195374 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11799902 11799902 PRJNA1195374_P_NODE_28270_length_426_cov_2.906516_g27926_i0 PRJNA1195374 28270 426 2.906516 12.38175816 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 192 5.2699999999999984e-55   NR HLT48280.1 2838334 g27926 i0 70.9 1.97887323943662 141 40 99.3 1 425 3 427 566 HLT48280.1 glutamine--fructose-6-phosphate transaminase (isomerizing) [Rubricoccaceae bacterium] diamond 843 192 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
13075852 13075852 PRJNA1195374_P_NODE_74531_length_249_cov_0.875000_g74187_i0 PRJNA1195374 74531 249 0.875 2.17875 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 135 7.12e-35   NR MDX1418555.1 2838334 g74187 i0 82.9 23.6506024096386 82 14 98.8 0 248 3 437 518 MDX1418555.1 aconitate hydratase AcnA [Rubricoccaceae bacterium] diamond 5889 135 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31684141 31684141 PRJNA1195374_P_NODE_67437_length_260_cov_1.235294_g67093_i0 PRJNA1195374 67437 260 1.235294 3.2117644 Rhodothermales bacterium 2306054 Bacteria Bacteria 54.7 2.89e-6   NR MEP0548051.1 2306054 g67093 i0 38.8 1.84615384615385 80 45 92.3 1 253 14 938 1013 MEP0548051.1 isoleucine--tRNA ligase [Rhodothermales bacterium] diamond 480 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;