RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1195374", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1195374 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13796168 13796168 PRJNA1195374_P_NODE_57071_length_287_cov_1.439252_g56727_i0 PRJNA1195374 57071 287 1.439252 4.13065324 Fibrobacterota bacterium 2052160 Bacteria Bacteria 134 3.89e-36   NR MDB5104168.1 2052160 g56727 i0 63.6 9.34494773519164 88 31 92 1 2 265 100 186 MDB5104168.1 putative coproporphyrinogen oxidase, aerobic [Fibrobacterota bacterium] diamond 2682 134 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
28146489 28146489 PRJNA1195374_P_NODE_78345_length_246_cov_0.890173_g78001_i0 PRJNA1195374 78345 246 0.890173 2.18982558 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 43.1 0.0273   NR MCX7725837.1 2813024 g78001 i0 34.8 0.841463414634146 69 41 84.1 2 238 32 383 447 MCX7725837.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE [Chitinispirillaceae bacterium] diamond 207 43.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;