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contig_metadata

23 rows where bioproject = "PRJNA1193541" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1193541 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
320627 320627 PRJNA1193541_P_NODE_12781_length_249_cov_0.875000_g12643_i0 PRJNA1193541 12781 249 0.875 2.17875 Mus musculus 10090 Chordata Chordata 460 3.16e-125   NTclustered gi|26185464|emb|AL671899.11| 10090 g12643 i0 100 7.57028112449799 249 0 100 0 1 249 22762 22514 Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete sequence blastn 1885 460 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4147471 4147471 PRJNA1193541_P_NODE_11924_length_252_cov_1.653631_g11786_i0 PRJNA1193541 11924 252 1.653631 4.16715012 Cairina moschata 8855 Chordata Chordata 52.8 0.023   NTclustered gi|2921976028|gb|CP130398.1| 8855 g11786 i0 100 0.111111111111111 28 0 11 0 10 37 9382051 9382078 Cairina moschata breed yongchun chromosome 20 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
7420290 7420290 PRJNA1193541_P_NODE_12786_length_249_cov_0.875000_g12648_i0 PRJNA1193541 12786 249 0.875 2.17875 Polypteridae 8289 Chordata Chordata 337 5.559999999999998e-88   NTclustered gi|2327554546|ref|XM_051932774.1| 27687 g12648 i0 92.405 19.7791164658635 237 16 94 2 11 245 889 1125 PREDICTED: Erpetoichthys calabaricus E3 SUMO-protein ligase ZBED1-like (LOC127529397), mRNA blastn 4925 340 0.991176470588235 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
8695403 8695403 PRJNA1193541_P_NODE_13487_length_246_cov_1.664740_g13349_i0 PRJNA1193541 13487 246 1.66474 4.0952604 Bos 9903 Chordata Chordata 436 5.25e-118   NTclustered gi|2633822459|ref|XM_061404520.1| 9906 g13349 i0 98.78 100 246 2 100 1 1 246 5687 5443 PREDICTED: Bos javanicus transforming acidic coiled-coil containing protein 1 (TACC1), transcript variant X10, mRNA blastn 24600 436 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
8695404 8695404 PRJNA1193541_P_NODE_14227_length_244_cov_0.900585_g14089_i0 PRJNA1193541 14227 244 0.900585 2.1974274 Bos 9903 Chordata Chordata 451 1.86e-122   NTclustered gi|2633843460|ref|XM_061411821.1| 9906 g14089 i0 100 82.5204918032787 244 0 100 0 1 244 3483 3726 PREDICTED: Bos javanicus 24-dehydrocholesterol reductase (DHCR24), mRNA blastn 20135 451 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
9248508 9248508 PRJNA1193541_P_NODE_13628_length_246_cov_0.890173_g13490_i0 PRJNA1193541 13628 246 0.890173 2.18982558 Canis lupus 9612 Chordata Chordata 302 2e-77   NTclustered gi|35187712|gb|AY339973.1| 9615 g13490 i0 89.627 11.5325203252033 241 19 97 4 4 242 1003 767 Canis familiaris clone 1 satellite sequence blastn 2837 302 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
14349661 14349661 PRJNA1193541_P_NODE_14532_length_243_cov_0.905882_g14394_i0 PRJNA1193541 14532 243 0.905882 2.20129326 Canis lupus 9612 Chordata Chordata 169 2.0799999999999997e-37   NTclustered gi|118344491|gb|AC186686.9| 9615 g14394 i0 89.051 33.4609053497942 137 13 56 2 104 239 97799 97934 Canis Familiaris chromosome 31, clone XX-265A5, complete sequence blastn 8131 169 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
15070116 15070116 PRJNA1193541_P_NODE_14292_length_244_cov_0.900585_g14154_i0 PRJNA1193541 14292 244 0.900585 2.1974274 Bovidae 9895 Chordata Chordata 444 3.11e-120   NTclustered gi|148747483|ref|NM_174684.2| 9913 g14154 i0 100 66.6229508196721 240 0 98 0 5 244 1904 1665 Bos taurus ATP synthase F1 subunit alpha (ATP5F1A), mRNA; nuclear gene for mitochondrial product blastn 16256 444 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
16897658 16897658 PRJNA1193541_P_NODE_10394_length_274_cov_0.855721_g10256_i0 PRJNA1193541 10394 274 0.855721 2.34467554 Mus musculus 10090 Chordata Chordata 52.8 0.025   NTclustered gi|354794436|gb|JN958937.1| 10090 g10256 i0 100 0.204379562043796 28 0 10 0 208 235 12780 12807 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Prss38:tm1a(KOMP)Wtsi; transgenic blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
18172225 18172225 PRJNA1193541_P_NODE_14775_length_242_cov_0.911243_g14637_i0 PRJNA1193541 14775 242 0.911243 2.20520806 Mus musculus 10090 Chordata Chordata 448 2.3799999999999995e-121   NTclustered gi|74221061|dbj|AK156345.1| 10090 g14637 i0 100 96.1157024793388 242 0 100 0 1 242 1434 1193 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830017G14 product:nuclear receptor coactivator 3, full insert sequence blastn 23260 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20168677 20168677 PRJNA1193541_P_NODE_4816_length_382_cov_1.495146_g4678_i0 PRJNA1193541 4816 382 1.495146 5.71145772 Bovidae 9895 Chordata Chordata 701 0   NTclustered gi|2633875230|ref|XM_061420457.1| 9906 g4678 i0 99.738 88.738219895288 382 1 100 0 1 382 35 416 PREDICTED: Bos javanicus C-X-C motif chemokine 6 (LOC133249694), mRNA blastn 33898 706 0.992917847025496 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
20721966 20721966 PRJNA1193541_P_NODE_14837_length_242_cov_0.911243_g14699_i0 PRJNA1193541 14837 242 0.911243 2.20520806 Mus musculus 10090 Chordata Chordata 448 2.3799999999999995e-121   NTclustered gi|55774372|gb|AC112263.4| 10090 g14699 i0 100 72.301652892562 242 0 100 0 1 242 86490 86731 Mus musculus BAC clone RP23-403P24 from 5, complete sequence blastn 17497 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21997297 21997297 PRJNA1193541_P_NODE_12858_length_249_cov_0.875000_g12720_i0 PRJNA1193541 12858 249 0.875 2.17875 Mus musculus 10090 Chordata Chordata 460 3.16e-125   NTclustered gi|45120398|gb|AC141888.4| 10090 g12720 i0 100 8.66666666666667 249 0 100 0 1 249 100491 100243 Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence blastn 2158 460 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
21997480 21997480 PRJNA1193541_P_NODE_8858_length_292_cov_1.159817_g8720_i0 PRJNA1193541 8858 292 1.159817 3.38666564 Bos indicus x Bos taurus 30522 Chordata Chordata 540 4.74e-149   NTclustered gi|1542929076|ref|XM_027528309.1| 30522 g8720 i0 100 80.4452054794521 292 0 100 0 1 292 1808 2099 PREDICTED: Bos indicus x Bos taurus eukaryotic translation initiation factor 4H (EIF4H), transcript variant X2, mRNA blastn 23490 540 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus x Bos taurus
23994519 23994519 PRJNA1193541_P_NODE_12459_length_250_cov_0.870056_g12321_i0 PRJNA1193541 12459 250 0.870056 2.17514 Bos 9903 Chordata Chordata 457 4.1099999999999985e-124   NTclustered gi|2633747538|ref|XM_061384924.1| 9906 g12321 i0 99.6 99.292 250 1 100 0 1 250 700 949 PREDICTED: Bos javanicus serine dehydratase (SDS), transcript variant X2, mRNA blastn 24823 457 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
26787677 26787677 PRJNA1193541_P_NODE_421_length_1024_cov_4.893796_g332_i1 PRJNA1193541 421 1024 4.893796 50.11247104 Staurois parvus 386267 Chordata Chordata 49.7 0.00621   NR CAI9536211.1 386267 g332 i1 54.2 0.140625 48 15 12 3 654 532 178 225 CAI9536211.1 unnamed protein product [Staurois parvus] diamond 144 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27167021 27167021 PRJNA1193541_P_NODE_5582_length_360_cov_2.383275_g5444_i0 PRJNA1193541 5582 360 2.383275 8.57979 Staurois parvus 386267 Chordata Chordata 62 1.65e-9   NR CAI9619393.1 386267 g5444 i0 53 1.08333333333333 66 18 44.2 3 198 356 50 115 CAI9619393.1 unnamed protein product, partial [Staurois parvus] diamond 390 62 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27388611 27388611 PRJNA1193541_P_NODE_11963_length_252_cov_0.849162_g11825_i0 PRJNA1193541 11963 252 0.849162 2.13988824 Engystomops pustulosus 76066 Chordata Chordata 45.4 5.43e-4   NR KAG8546926.1 76066 g11825 i0 51 0.583333333333333 49 24 58.3 0 62 208 9 57 KAG8546926.1 hypothetical protein GDO81_029527 [Engystomops pustulosus] diamond 147 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
27420288 27420288 PRJNA1193541_P_NODE_12623_length_249_cov_1.312500_g12485_i0 PRJNA1193541 12623 249 1.3125 3.268125 Staurois parvus 386267 Chordata Chordata 53.1 1.43e-6   NR CAI9548327.1 386267 g12485 i0 58 0.602409638554217 50 16 54.2 1 140 6 47 96 CAI9548327.1 unnamed protein product [Staurois parvus] diamond 150 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28304069 28304069 PRJNA1193541_P_NODE_12246_length_251_cov_0.865169_g12108_i0 PRJNA1193541 12246 251 0.865169 2.17157419 Ursus maritimus 29073 Chordata Chordata 79 7.36e-15   NR XP_040497168.1 29073 g12108 i0 59 0.932270916334661 78 31 93.2 1 17 250 240 316 XP_040497168.1 uncharacterized protein LOC103676899 [Ursus maritimus] diamond 234 79 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus maritimus
28746108 28746108 PRJNA1193541_P_NODE_13747_length_246_cov_0.890173_g13609_i0 PRJNA1193541 13747 246 0.890173 2.18982558 Regulus satrapa 13245 Chordata Chordata 47.8 4.35e-5   NR NWR50751.1 13245 g13609 i0 45.5 0.670731707317073 55 27 67.1 1 4 168 2 53 NWR50751.1 ZNF85 protein [Regulus satrapa] diamond 165 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Regulidae Regulus Regulus satrapa
30640934 30640934 PRJNA1193541_P_NODE_11033_length_265_cov_1.625000_g10895_i0 PRJNA1193541 11033 265 1.625 4.30625 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 45.1 0.00601   NR CAI9169444.1 3082113 g10895 i0 42.4 0.747169811320755 66 35 72.5 2 73 264 35 99 CAI9169444.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 198 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
32840832 32840832 PRJNA1193541_P_NODE_11140_length_264_cov_1.240838_g11002_i0 PRJNA1193541 11140 264 1.240838 3.27581232 Chordata 7711 Chordata Chordata 57 4.49e-7   NR KAG5201318.1 9940 g11002 i0 77.8 77.75 36 8 40.9 0 260 153 598 633 KAG5201318.1 hypothetical protein JEQ12_004081 [Ovis aries] diamond 20526 57.4 0.993031358885017 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;