RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1193541", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA1193541 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17620160 17620160 PRJNA1193541_P_NODE_12654_length_249_cov_0.875000_g12516_i0 PRJNA1193541 12654 249 0.875 2.17875 Myxococcia 32015 Bacteria Bacteria 318 2.0099999999999998e-82   NTclustered gi|913610804|gb|CP012333.1| 1391654 g12516 i0 89.641 136.935742971888 251 24 100 1 1 249 3943110 3942860 Labilithrix luteola strain DSM 27648, complete genome blastn 34097 318 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
32032306 32032306 PRJNA1193541_P_NODE_9158_length_288_cov_1.353488_g9020_i0 PRJNA1193541 9158 288 1.353488 3.89804544 Polyangiaceae bacterium 2268199 Bacteria Bacteria 84.3 1.53e-16   NR HEY3816545.1 2268199 g9020 i0 70.3 2.69791666666667 64 19 66.7 0 32 223 902 965 HEY3816545.1 carboxypeptidase regulatory-like domain-containing protein [Polyangiaceae bacterium] diamond 777 84.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;