RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1193541" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1193541 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1595439 1595439 PRJNA1193541_P_NODE_9142_length_288_cov_1.432558_g9004_i0 PRJNA1193541 9142 288 1.432558 4.12576704 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 527 3.63e-145   NTclustered gi|2651357787|gb|PP174302.1| 1892891 g9004 i0 99.653 65.21875 288 1 100 0 1 288 3523 3236 Amoebozoa sp. isolate 2M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18783 527 1 Eukaryota Amoebozoa             Amoebozoa sp.
26851065 26851065 PRJNA1193541_P_NODE_12481_length_250_cov_0.870056_g12343_i0 PRJNA1193541 12481 250 0.870056 2.17514 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 45.4 0.00471   NR XP_012752963.1 1410327 g12343 i0 27.4 1.008 84 60 99.6 1 1 249 1116 1199 XP_012752963.1 hypothetical protein SAMD00019534_071020 [Acytostelium subglobosum LB1] diamond 252 45.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
30913043 30913043 PRJNA1193541_P_NODE_13154_length_248_cov_0.880000_g13016_i0 PRJNA1193541 13154 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 115 1.23e-30   NR XP_641724.1 352472 g13016 i0 69.9 4.41532258064516 73 21 88.3 1 219 1 1 72 XP_641724.1 S60 ribosomal protein L21 [Dictyostelium discoideum AX4] diamond 1095 115 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;