RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA1192965" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1192965 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10524205 10524205 PRJNA1192965_P_NODE_3049_length_257_cov_2.510870_g3030_i0 PRJNA1192965 3049 257 2.51087 6.4529359 Pseudodiplogasteroides sp. SB257 669115 Nematoda Nematoda 169 2.2199999999999996e-37   NTclustered gi|256709253|gb|GQ422279.1| 669115 g3030 i0 85.366 25.3112840466926 164 23 63 1 92 254 45 208 Pseudodiplogasteroides sp. SB257 small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 6505 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Pseudodiplogasteroides Pseudodiplogasteroides sp. SB257
27091439 27091439 PRJNA1192965_P_NODE_5122_length_241_cov_0.916667_g5103_i0 PRJNA1192965 5122 241 0.916667 2.20916747 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 84 9.61e-17   NR KJH51267.1 29172 g5103 i0 54.9 10.7178423236515 71 32 88.4 0 240 28 103 173 KJH51267.1 hypothetical protein DICVIV_02546 [Dictyocaulus viviparus] diamond 2583 84.3 0.99644128113879 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
27628691 27628691 PRJNA1192965_P_NODE_4264_length_246_cov_0.890173_g4245_i0 PRJNA1192965 4264 246 0.890173 2.18982558 Opisthokonta 33154 Nematoda Nematoda 103 2.0499999999999999e-23   NR KAI6229547.1 269767 g4245 i0 54.3 14.7682926829268 81 37 98.8 0 2 244 666 746 KAI6229547.1 RNA helicase [Aphelenchoides besseyi] diamond 3633 103 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
28556847 28556847 PRJNA1192965_P_NODE_4287_length_246_cov_0.861272_g4268_i0 PRJNA1192965 4287 246 0.861272 2.11872912 Meloidogyne graminicola 189291 Nematoda Nematoda 134 2.6099999999999993e-34   NR KAF7634404.1 189291 g4268 i0 76.8 3.96341463414634 82 19 100 0 246 1 230 311 KAF7634404.1 AA_TRNA_LIGASE_II domain-containing protein [Meloidogyne graminicola] diamond 975 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
29314480 29314480 PRJNA1192965_P_NODE_809_length_421_cov_3.321839_g790_i0 PRJNA1192965 809 421 3.321839 13.98494219 Pristionchus fissidentatus 1538716 Nematoda Nematoda 86.7 8.94e-19   NR GMT18625.1 1538716 g790 i0 41.3 0.862232779097387 121 66 85.5 2 404 45 10 126 GMT18625.1 hypothetical protein PFISCL1PPCAC_9922 [Pristionchus fissidentatus] diamond 363 86.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
30407692 30407692 PRJNA1192965_P_NODE_3353_length_251_cov_0.865169_g3334_i0 PRJNA1192965 3353 251 0.865169 2.17157419 Metazoa 33208 Nematoda Nematoda 78.2 1.38e-14   NR KFD58966.1 68888 g3334 i0 42.7 33.3585657370518 82 47 98 0 5 250 382 463 KFD58966.1 hypothetical protein M513_00129 [Trichuris suis] diamond 8373 78.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
31177920 31177920 PRJNA1192965_P_NODE_2215_length_289_cov_1.421296_g2196_i0 PRJNA1192965 2215 289 1.421296 4.10754544 Cylicocyclus nassatus 53992 Nematoda Nematoda 47 0.0019   NR CAJ0594742.1 53992 g2196 i0 34.1 1.59861591695502 82 49 85.1 2 248 3 75 151 CAJ0594742.1 unnamed protein product [Cylicocyclus nassatus] diamond 462 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
31355448 31355448 PRJNA1192965_P_NODE_736_length_439_cov_2.112022_g717_i0 PRJNA1192965 736 439 2.112022 9.27177658 Rhabditida 6236 Nematoda Nematoda 95.5 3.31e-20   NR KAK6028514.1 6317 g717 i0 46.1 2.60364464692483 115 52 78.6 2 93 437 41 145 KAK6028514.1 papain family cysteine protease [Ostertagia ostertagi] diamond 1143 95.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
32285694 32285694 PRJNA1192965_P_NODE_3959_length_247_cov_0.885057_g3940_i0 PRJNA1192965 3959 247 0.885057 2.18609079 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 68.2 4.27e-11   NR CAD5223258.1 6326 g3940 i0 47.6 1.53036437246964 63 33 76.5 0 58 246 68 130 CAD5223258.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 378 68.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;